RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SLC35G3Q8N808 338 aa6.7□□□□□ -1.34
VPS13A-202ENST00000357409 COQ10AQ96MF6 247 aa6.7□□□□□ -1.34
VPS13A-202ENST00000357409 MEPEQ9NQ76 525 aaPredicted RBP6.7□□□□□ -1.34
VPS13A-202ENST00000357409 DCAF13Q9NV06 445 aaKnown RBP6.7□□□□□ -1.34
VPS13A-202ENST00000357409 C17orf113A0A1B0GUU1 675 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 TK1P04183 234 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 TRHRP34981 398 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-202ENST00000357409 SLC39A13Q96H72 371 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 METTL17Q9H7H0 456 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-202ENST00000357409 FBXO7Q9Y3I1 522 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 TLCD2A6NGC4 264 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 WNT11O96014 354 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 RAB13P51153 203 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 FLI1Q01543 452 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-202ENST00000357409 LRP11Q86VZ4 500 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 LMF2Q9BU23 707 aaKnown RBP6.69□□□□□ -1.34
VPS13A-202ENST00000357409 ZCCHC4Q9H5U6 513 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 SIAEQ9HAT2 523 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 A4GNTQ9UNA3 340 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 AKR7A2O43488 359 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 CACNG3O60359 315 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 HLA-DOBP13765 273 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 FOSL1P15407 271 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 CPEP16870 476 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 CTRB1P17538 263 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 WNT3P56703 355 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 CTRB2Q6GPI1 263 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 H2BFWTQ7Z2G1 175 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 SLC25A22Q9H936 323 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 CD320Q9NPF0 282 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 C7orf72A4D263 438 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 H3BNX3 289 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 CELF2-AS1Q8N7Q2 184 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 TMEM163Q8TC26 289 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 CLMPQ9H6B4 373 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 TRAV36DV7A0A075B6V5 113 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 EIF3GO75821 320 aaKnown RBP eCLIP6.69□□□□□ -1.34
VPS13A-202ENST00000357409 NPPAP01160 153 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 MMP7P09237 267 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-202ENST00000357409 MMP11P24347 488 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 HTR2AP28223 471 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 MOGQ16653 247 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 CEACAM16Q2WEN9 425 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 COQ5Q5HYK3 327 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 ABHD17CQ6PCB6 329 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 CBLL1Q75N03 491 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 SMIM15Q7Z3B0 74 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 MDGA2Q7Z553 956 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 C2CD4CQ8TF44 421 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 CENPOQ9BU64 300 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 LRRC61Q9BV99 259 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 ADAMTS5Q9UNA0 930 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 KIDINS220Q9ULH0 1771 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 KCNK5O95279 499 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 PET100P0DJ07 73 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 RTL6Q6ICC9 239 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 ALKAL1Q6UXT8 129 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 MAML2Q8IZL2 1156 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-202ENST00000357409 MOB3AQ96BX8 217 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 S1PR3Q99500 378 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 FBXO34Q9NWN3 711 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 A0A1W2PR64 198 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 TMEM221A6NGB7 291 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 M0R296 226 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 ARPC3O15145 178 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 TBXA2RP21731 343 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 RIPPLY1Q0D2K3 151 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 TMEM81Q6P7N7 255 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 CMIPQ8IY22 773 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 LSMEM2Q8N112 164 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 TIMD4Q96H15 378 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 MROH2AA6NES4 1674 aa6.69□□□□□ -1.34
VPS13A-202ENST00000357409 A8MXE2 369 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 ABCD4O14678 606 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 REG1BP48304 166 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 Q56UQ5 140 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 C17orf107Q6ZR85 190 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 NLRP8Q86W28 1048 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 OR52B4Q8NGK2 314 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 BLNKQ8WV28 456 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 MS4A6EQ96DS6 147 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 PITHD1Q9GZP4 211 aaPredicted RBP6.68□□□□□ -1.34
VPS13A-202ENST00000357409 FN3KRPQ9HA64 309 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 DNASE2O00115 360 aaPredicted RBP6.68□□□□□ -1.34
VPS13A-202ENST00000357409 PHYHO14832 338 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 HSF1Q00613 529 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 ADIRFQ15847 76 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 FAM189A2Q15884 450 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 HAGHQ16775 308 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 FAM27D1Q5T7N8 215 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 UHRF2Q96PU4 802 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 A0A1W2PPE3 182 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 HTR2CP28335 458 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 ZNF91Q05481 1191 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 ALKBH1Q13686 389 aaKnown RBP6.68□□□□□ -1.34
VPS13A-202ENST00000357409 THEM4Q5T1C6 240 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 C1orf140Q5VVS0 124 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 METRNLQ641Q3 311 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 OR8U1Q8NH10 309 aa6.68□□□□□ -1.34
VPS13A-202ENST00000357409 OR5B3Q8NH48 314 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms