RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NXPH3O95157 252 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 OTX2P32243 289 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 ECI1P42126 302 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 IKZF1Q13422 519 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 SSX1Q16384 188 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 GALNT16Q8N428 558 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 NUDCD2Q8WVJ2 157 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 MS4A6EQ96DS6 147 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 ACAD8Q9UKU7 415 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 COA3Q9Y2R0 106 aaPredicted RBP17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 LOC107986453A0A1B0GWG9 222 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 DSCR3O14972 297 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 CRYBB2P43320 205 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 C2orf76Q3KRA6 126 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 C5orf46Q6UWT4 87 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 UHRF2Q96PU4 802 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 DFFBO76075 338 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 CBX7O95931 251 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 F11P03951 625 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 POU3F3P20264 500 aaPredicted RBP17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 NFYBP25208 207 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 STAC2Q6ZMT1 411 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 OR1E3Q8WZA6 343 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 SCN9AQ15858 1988 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 PYCARD-AS1I3L0S3 204 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 CST5P28325 142 aaPredicted RBP17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 HOXA9P31269 272 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 AKR1C3P42330 323 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 PSMB3P49720 205 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 P2RX1P51575 399 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 BAXQ07812 192 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 DEFB133Q30KQ1 61 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 LRRTM1Q86UE6 522 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 OR5L1Q8NGL2 311 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 HMGCLL1Q8TB92 370 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 FTSJ1Q9UET6 329 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 CCL26Q9Y258 94 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 RREB1Q92766 1687 aa17.87■□□□□ 0.45
CCDC88B-202ENST00000356786 RPL12P30050 165 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 TAF9Q16594 264 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 FAM71CQ8NEG0 241 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 ZNF845Q96IR2 970 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 SLC23A2Q9UGH3 650 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 NKX2-1P43699 371 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 F2RL1P55085 397 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 GABREP78334 506 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 ZNF684Q5T5D7 378 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 OR1S2Q8NGQ3 325 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 SLC6A18Q96N87 628 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 NKX2-4Q9H2Z4 354 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 SDCBPO00560 298 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 NQO2P16083 231 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 CLDN17P56750 224 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 DOC2BQ14184 412 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 C4orf17Q53FE4 359 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 FCRL6Q6DN72 434 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 LCORQ96JN0 433 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 PLA2G12AQ9BZM1 189 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 ZNF587BE7ETH6 402 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 CSF2RBP32927 897 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 PCBD1P61457 104 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 CLEC9AQ6UXN8 241 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 LINC01465Q8N7H1 131 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 MITD1Q8WV92 249 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 STACQ99469 402 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 MARVELD1Q9BSK0 173 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 ZDHHC5Q9C0B5 715 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 DNAJB11Q9UBS4 358 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 AK3Q9UIJ7 227 aa17.86■□□□□ 0.45
CCDC88B-202ENST00000356786 PHIPQ8WWQ0 1821 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 BCL2L11O43521 198 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 C1QAP02745 245 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 AADACP22760 399 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 SLC16A14Q7RTX9 510 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 FBXW5Q969U6 566 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 MRPL38Q96DV4 380 aaKnown RBP17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 MAN2B1O00754 1011 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 RPA2P15927 270 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 CATR1Q13166 79 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 FAM199XQ6PEV8 388 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 TMEM123Q8N131 208 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 DAZAP1Q96EP5 407 aaKnown RBP17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 NECAP2Q9NVZ3 263 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 TRAPPC2LQ9UL33 140 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 C19orf53Q9UNZ5 99 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 SHANK3Q9BYB0 1731 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 A8MVM7 634 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 C17orf112F2Z3M2 114 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 HBQ1P09105 142 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 HLA-DOBP13765 273 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 ST3GAL2Q16842 350 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 ARHGAP11BQ3KRB8 267 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 TMEM31Q5JXX7 168 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 GLDNQ6ZMI3 551 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 OR6K3Q8NGY3 331 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 ENKD1Q9H0I2 346 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 SRPK3Q9UPE1 567 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 ECM29Q5VYK3 1845 aa17.85■□□□□ 0.45
CCDC88B-202ENST00000356786 TRBV11-1A0A0K0K1C0 115 aa17.84■□□□□ 0.45
CCDC88B-202ENST00000356786 RGS13O14921 159 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms