RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 ZNF891A8MT65 544 aaPredicted RBP13.51□□□□□ -0.25
COL17A1-201ENST00000353479 M0R135 149 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 ATP6V1G1O75348 118 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 GDNFP39905 211 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 WFDC8Q8IUA0 241 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 H1FXQ92522 213 aaKnown RBP13.51□□□□□ -0.25
COL17A1-201ENST00000353479 ZNF799Q96GE5 643 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 PLXNA1Q9UIW2 1896 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 A0A087WUJ7 227 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 TRAV17A0A0B4J275 112 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 IGHV3-64DA0A0J9YX35 117 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 OR6C65A6NJZ3 312 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 GABARAPO95166 117 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 B4GALT1P15291 398 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 FCARP24071 287 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 ARR3P36575 388 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 FBXW12Q6X9E4 464 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 ADGRE4PQ86SQ3 457 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 OCSTAMPQ9BR26 566 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 LOC100289279A0A1B0GTE1 492 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 OR8U9P0C7N5 309 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 EPHA2P29317 976 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 SLC9A3R2Q15599 337 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 USB1Q9BQ65 265 aaKnown RBP13.51□□□□□ -0.25
COL17A1-201ENST00000353479 FBXO34Q9NWN3 711 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 TRGV5A0A0B4J1U4 118 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 M0R1B8 84 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 HLA-AP01891 365 aaKnown RBP13.51□□□□□ -0.25
COL17A1-201ENST00000353479 USP51Q70EK9 711 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 SFTPA2Q8IWL1 248 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 CT55Q8WUE5 264 aa13.51□□□□□ -0.25
COL17A1-201ENST00000353479 ZNF780AO75290 641 aaPredicted RBP13.5□□□□□ -0.25
COL17A1-201ENST00000353479 ZNF254O75437 659 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 APEX1P27695 318 aaKnown RBP13.5□□□□□ -0.25
COL17A1-201ENST00000353479 PMPCAQ10713 525 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 ADPRMQ3LIE5 342 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 AGAP6Q5VW22 663 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 GFRALQ6UXV0 394 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 RDH10Q8IZV5 341 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 EMG1Q92979 244 aaKnown RBP13.5□□□□□ -0.25
COL17A1-201ENST00000353479 ZG16BQ96DA0 208 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 KCNG2Q9UJ96 466 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 HOXB5P09067 269 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 CD53P19397 219 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 TMEM81Q6P7N7 255 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 C12orf45Q8N5I9 185 aaPredicted RBP13.5□□□□□ -0.25
COL17A1-201ENST00000353479 ZNF285Q96NJ3 590 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 DPM1O60762 260 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 IFNA2P01563 188 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 OR8G1Q15617 311 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 WDR88Q6ZMY6 472 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 OR2B2Q9GZK3 357 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 BANF2Q9H503 90 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 ETV7Q9Y603 341 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 ATP23Q9Y6H3 246 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 SCN10AQ9Y5Y9 1956 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 LRRC30A6NM36 301 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 CD1EP15812 388 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 UBE2IP63279 158 aaKnown RBP13.5□□□□□ -0.25
COL17A1-201ENST00000353479 GPR157Q5UAW9 335 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 ANKRD16Q6P6B7 361 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 PHC2Q8IXK0 858 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 ALKBH3Q96Q83 286 aaPredicted RBP13.5□□□□□ -0.25
COL17A1-201ENST00000353479 MED18Q9BUE0 208 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 FAM117AQ9C073 453 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 EIF5A2Q9GZV4 153 aaKnown RBP13.5□□□□□ -0.25
COL17A1-201ENST00000353479 RAB22AQ9UL26 194 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 TP53TG5Q9Y2B4 290 aa13.5□□□□□ -0.25
COL17A1-201ENST00000353479 A0A0B4J2E0 115 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 A0A1B0GX12 115 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 FUOMA2VDF0 154 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 FAM157BP0CG42 384 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 JUNBP17275 347 aaPredicted RBP13.49□□□□□ -0.25
COL17A1-201ENST00000353479 MYBPHQ13203 477 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 EDDM3AQ14507 147 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 IDO2Q6ZQW0 420 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 CPNE4Q96A23 557 aaPredicted RBP13.49□□□□□ -0.25
COL17A1-201ENST00000353479 RPS19P39019 145 aaKnown RBP13.49□□□□□ -0.25
COL17A1-201ENST00000353479 MEOX1P50221 254 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 ZNF74Q16587 644 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 ACTBL2Q562R1 376 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 SECTM1Q8WVN6 248 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 ATF6BQ99941 703 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 PLA2G12AQ9BZM1 189 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 UFSP2Q9NUQ7 469 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 A0A1W2PPV9 198 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 DHHO43323 396 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 UBL3O95164 117 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 NAGAP17050 411 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 RPS23P62266 143 aaKnown RBP13.49□□□□□ -0.25
COL17A1-201ENST00000353479 AADACL3Q5VUY0 350 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 SLC22A25Q6T423 547 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 ZNF679Q8IYX0 411 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 D2HGDHQ8N465 521 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 RTL8AQ9BWD3 113 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 RNF167Q9H6Y7 350 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 PCOLCE2Q9UKZ9 415 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 IGHV5-10-1A0A0J9YXX1 117 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 SPAARA0A1B0GVQ0 90 aa13.49□□□□□ -0.25
COL17A1-201ENST00000353479 MEIOCA2RUB1 952 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms