RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ELOVL3Q9HB03 270 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 AKIP1Q9NQ31 210 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 FRRS1LQ9P0K9 344 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 UGT2A1Q9Y4X1 527 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 LIPGQ9Y5X9 500 aa13.71□□□□□ -0.21
LIMS1-202ENST00000338045 IGKV3D-15A0A087WSY6 115 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 TMCC2O75069 709 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 RPP14O95059 124 aaKnown RBP13.7□□□□□ -0.22
LIMS1-202ENST00000338045 ZFPL1O95159 310 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 WNT11O96014 354 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 NTF4P34130 210 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 MTNR1BP49286 362 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF829Q3KNS6 432 aaPredicted RBP13.7□□□□□ -0.22
LIMS1-202ENST00000338045 ACSM3Q53FZ2 586 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 PHYHD1Q5SRE7 291 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 DEGS2Q6QHC5 323 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 IGFL3Q6UXB1 125 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 DCXRQ7Z4W1 244 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 TEX19Q8NA77 164 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 OR10H5Q8NGA6 315 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 OR6N1Q8NGY5 312 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 OR2G2Q8NGZ5 317 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 PPIL3Q9H2H8 161 aaKnown RBP13.7□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF281Q9Y2X9 895 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 A0A1W2PPL8 197 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF254O75437 659 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 GATBO75879 557 aaKnown RBP13.7□□□□□ -0.22
LIMS1-202ENST00000338045 CLEC2LP0C7M8 214 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 MXD1Q05195 221 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 RASGEF1BQ0VAM2 473 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 UNQ9370/PRO34162Q6UXP9 181 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 CEACAM19Q7Z692 300 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 SLC7A5P1Q8MH63 180 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 OR13C5Q8NGS8 318 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 RNF133Q8WVZ7 376 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 TPK1Q9H3S4 243 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 POLE4Q9NR33 117 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 MSRB2Q9Y3D2 182 aa13.7□□□□□ -0.22
LIMS1-202ENST00000338045 TRGV5A0A0B4J1U4 118 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 IQCMA0A1B0GVH7 501 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 OR4C45A6NMZ5 311 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 CDAP32320 146 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 SRYQ05066 204 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 YIF1BQ5BJH7 314 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 ZMAT1Q5H9K5 638 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 PAMR1Q6UXH9 720 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 KRT77Q7Z794 578 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 LINC00346Q8IVM7 164 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 ABHD3Q8WU67 409 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 S100ZQ8WXG8 99 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 PHYHIPQ92561 330 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 TMEM45BQ96B21 275 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 DCBLD2Q96PD2 775 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 DEFB127Q9H1M4 99 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 SEC61A2Q9H9S3 476 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 LRP12Q9Y561 859 aa13.69□□□□□ -0.22
LIMS1-202ENST00000338045 PCDHGA9Q9Y5G4 932 aaKnown RBP13.69□□□□□ -0.22
LIMS1-202ENST00000338045 CLDN25C9JDP6 229 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 BOLA2-SMG1P6H3BVE0 249 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 CASKO14936 926 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 DHHO43323 396 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 SRSF10O75494 262 aaKnown RBP13.68□□□□□ -0.22
LIMS1-202ENST00000338045 IGHG3P01860 377 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 CPN1P15169 458 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 CCR9P51686 369 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 RIDAP52758 137 aaKnown RBP13.68□□□□□ -0.22
LIMS1-202ENST00000338045 PMP22Q01453 160 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 HNRNPA0Q13151 305 aaKnown RBP13.68□□□□□ -0.22
LIMS1-202ENST00000338045 DCTN2Q13561 401 aaKnown RBP13.68□□□□□ -0.22
LIMS1-202ENST00000338045 FAM27D1Q5T7N8 215 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 MFSD4AQ8N468 514 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 RGP1Q92546 391 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-202ENST00000338045 C4orf45Q96LM5 186 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 C6orf62Q9GZU0 229 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-202ENST00000338045 C1orf198Q9H425 327 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 PLGRKTQ9HBL7 147 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 PLEKHB1Q9UF11 243 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-202ENST00000338045 LHFPL6Q9Y693 200 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF407Q9C0G0 2248 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 CACNA1CQ13936 2221 aa13.68□□□□□ -0.22
LIMS1-202ENST00000338045 TMEM212A6NML5 194 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 SLC43A1O75387 559 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 UCHL1P09936 223 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 LSM6P62312 80 aaKnown RBP13.67□□□□□ -0.22
LIMS1-202ENST00000338045 CORO6Q6QEF8 472 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 RHOUQ7L0Q8 258 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 AAED1Q7RTV5 226 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 PRSS35Q8N3Z0 413 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 OR5AK2Q8NH90 309 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 ZNF775Q96BV0 537 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-202ENST00000338045 WDYHV1Q96HA8 205 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 ULBP2Q9BZM5 246 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 LDAHQ9H6V9 325 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 HMG20AQ9NP66 347 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 EMC7Q9NPA0 242 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 SPRR3Q9UBC9 169 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 CRNNQ9UBG3 495 aaPredicted RBP13.67□□□□□ -0.22
LIMS1-202ENST00000338045 MCTS1Q9ULC4 181 aaKnown RBP13.67□□□□□ -0.22
LIMS1-202ENST00000338045 PRELID1Q9Y255 219 aa13.67□□□□□ -0.22
LIMS1-202ENST00000338045 PEX16Q9Y5Y5 336 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms