RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 DNAJA3Q96EY1 480 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 EMC6Q9BV81 110 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 CCDC88CQ9P219 2028 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 CD8B2A6NJW9 211 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 TNFRSF10AO00220 468 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 CD8BP10966 210 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 AP2S1P53680 142 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF766Q5HY98 468 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 RNLSQ5VYX0 342 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 DCDC5Q6ZRR9 648 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 OR2G2Q8NGZ5 317 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 RASD2Q96D21 266 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 TMEM121BQ9BXQ6 578 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 EGLN1Q9GZT9 426 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 GP6Q9HCN6 339 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF223Q9UK11 482 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 PROCRQ9UNN8 238 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 C14orf166Q9Y224 244 aaKnown RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 AK6Q9Y3D8 172 aaKnown RBP6.2□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF175Q9Y473 711 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 LCTP09848 1927 aa6.2□□□□□ -1.42
SF3B1-201ENST00000335508 TRABD2BA6NFA1 517 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 TEX46H3BTG2 121 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 GABRPO00591 440 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 G0S2P27469 103 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 SCAND1P57086 179 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 MLF1P58340 268 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 CD226Q15762 336 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 CEACAM16Q2WEN9 425 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF684Q5T5D7 378 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 NUFIP2Q7Z417 695 aaKnown RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 FAM109AQ8N4B1 249 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 TMEM52Q8NDY8 209 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 CAPSLQ8WWF8 208 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 SORCS2Q96PQ0 1159 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 FOXB1Q99853 325 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 PRRT1Q99946 306 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 DYNLRB1Q9NP97 96 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 TXNL4BQ9NX01 149 aaKnown RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 DNAJB11Q9UBS4 358 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 KCNN3Q9UGI6 736 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 MDC1Q14676 2089 aaKnown RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 KIR2DS1A0A191URI9 304 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 OR6C6A6NF89 314 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 CTDSP2O14595 271 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 GTF2F2P13984 249 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ARSBP15848 533 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 LIPAP38571 399 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 KIR2DS4P43632 304 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 KIR2DS1Q14954 304 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 CHRFAM7AQ494W8 412 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 B3GLCTQ6Y288 498 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 RHOUQ7L0Q8 258 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 OR11L1Q8NGX0 322 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 SNAPC3Q92966 411 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 SLAMF6Q96DU3 332 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 METTL9Q9H1A3 318 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 NOX4Q9NPH5 578 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 GPR27Q9NS67 375 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 MGAT4AQ9UM21 535 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 MPDZO75970 2070 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 NPIPB9F8W1W9 429 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 H7C1C5 153 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 MAS1P04201 325 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 HOXB1P14653 301 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ALOX5APP20292 161 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 HTR2CP28335 458 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 LCN6P62502 163 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 SKP2Q13309 424 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 SLC17A1Q14916 467 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ZNF658BQ4V348 819 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ACTBL2Q562R1 376 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 DCXRQ7Z4W1 244 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 BEST3Q8N1M1 668 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 TMEM105Q8N8V8 129 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 OTOSQ8NHW6 89 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 APOBEC3DQ96AK3 386 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 GNRHR2Q96P88 292 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 UQCC2Q9BRT2 126 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 RIMS4Q9H426 269 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 CALHM2Q9HA72 323 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 PCYT1BQ9Y5K3 369 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 DSPPQ9NZW4 1301 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 CREBL2O60519 120 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 OR7C1O76099 320 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 RAB3DO95716 219 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 RECKO95980 971 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 PSMB10P40306 273 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 MTCP1P56278 107 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 WIPI1Q5MNZ9 446 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 TMPRSS9Q7Z410 1059 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 OR13C3Q8NGS6 347 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 SPSB1Q96BD6 273 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 NUDT16L1Q9BRJ7 211 aaKnown RBP6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ATG5Q9H1Y0 275 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 FBXO34Q9NWN3 711 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 CEPT1Q9Y6K0 416 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ARID2Q68CP9 1835 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 ACOD1A6NK06 481 aa6.19□□□□□ -1.42
SF3B1-201ENST00000335508 E9PI62 339 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms