RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TP53I3Q53FA7 332 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 HIST2H3PS2Q5TEC6 136 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 FAM27BQ5VT28 67 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 OR2A2Q6IF42 318 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 HIST2H3AQ71DI3 136 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 LINGO2Q7L985 606 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 FAM220AQ7Z4H9 259 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 SMIM19Q96E16 107 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 AMELYQ99218 206 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 SIAEQ9HAT2 523 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 GPR35Q9HC97 309 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 ACOXLQ9NUZ1 547 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 TMEM38BQ9NVV0 291 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 MALT1Q9UDY8 824 aa13.16□□□□□ -0.3
CCDC88C-202ENST00000334448 MBD3L4A6NDZ8 208 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 MBD3L3A6NE82 208 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 MBD3L5A6NJ08 208 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 GPRIN2O60269 458 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 ATE1O95260 518 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 CELP19835 753 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 FGF9P31371 208 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 OPRL1P41146 370 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 EIF2B1Q14232 305 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 ENDOGQ14249 297 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 EIF2S3LQ2VIR3 472 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 TSPO2Q5TGU0 170 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 MBD3L2Q8NHZ7 208 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 RPL3LQ92901 407 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 APH1AQ96BI3 265 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 PGLYRP3Q96LB9 341 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 FOXN4Q96NZ1 517 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 C1orf198Q9H425 327 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 CRLF2Q9HC73 371 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 ZNF71Q9NQZ8 489 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 SLCO1C1Q9NYB5 712 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 GNG8Q9UK08 70 aa13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 SIRT4Q9Y6E7 314 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-202ENST00000334448 TRDV1A0A1B0GX56 115 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 GPX5O75715 221 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 SC5DO75845 299 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 CNOT4O95628 575 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 HLA-DPB1P04440 258 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 CRHP06850 196 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 CST2P09228 141 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 OR8G3PP0DMU2 310 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 SFTPCP11686 197 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 CDAP32320 146 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 UGT2B10P36537 528 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 RPS27P42677 84 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 GUCA1AP43080 201 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 OR3A2P47893 321 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 CCR9P51686 369 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 NFATC3Q12968 1075 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 LIPNQ5VXI9 398 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 P4HA3Q7Z4N8 544 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 DCXRQ7Z4W1 244 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 SYT9Q86SS6 491 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 MS4A15Q8N5U1 240 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 FAM57AQ8TBR7 257 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 THEM6Q8WUY1 208 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF775Q96BV0 537 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 MAP6Q96JE9 813 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 ZFP3Q96NJ6 502 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 ALKBH3Q96Q83 286 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 TM9SF2Q99805 663 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF416Q9BWM5 594 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 MROQ9BYG7 248 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 OR51E2Q9H255 320 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 NIPAL2Q9H841 368 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 SEC61A2Q9H9S3 476 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 EMC7Q9NPA0 242 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 SLC7A10Q9NS82 523 aa13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 DDX28Q9NUL7 540 aaKnown RBP13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 GDF2Q9UK05 429 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-202ENST00000334448 FIGNL2A6NMB9 653 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF587BE7ETH6 402 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 SRSF10O75494 262 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 EDNRAP25101 427 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 CTSSP25774 331 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 RIDAP52758 137 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 SH3BGRP55822 239 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 RPS25P62851 125 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 ROR2Q01974 943 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 CEACAM16Q2WEN9 425 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 PLXDC2Q6UX71 529 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 FAM214BQ7L5A3 538 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 NUFIP2Q7Z417 695 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 ABHD12BQ7Z5M8 362 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 KBTBD8Q8NFY9 601 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 OR10S1Q8NGN2 331 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 ZNF837Q96EG3 531 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 DACH2Q96NX9 599 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 TRIB1Q96RU8 372 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 FOXB1Q99853 325 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 CDADC1Q9BWV3 514 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 RBM24Q9BX46 236 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 TTTY10Q9BZA0 68 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 SLC25A18Q9H1K4 315 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 ELOVL3Q9HB03 270 aa13.13□□□□□ -0.31
CCDC88C-202ENST00000334448 PNRC2Q9NPJ4 139 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms