RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 BMP5P22003 454 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 ARRB2P32121 409 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 OPRD1P41143 372 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 PCBD1P61457 104 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 TNFRSF13CQ96RJ3 184 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 NIPSNAP1Q9BPW8 284 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 NUDT9Q9BW91 350 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 LRIT1Q9P2V4 623 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 SLC23A1Q9UHI7 598 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 CD46P15529 392 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 HBA1P69905 142 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 ZNF566Q969W8 418 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 LOC102723971A0A1B0GUV8 181 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 CRYM-AS1A6NIL9 109 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 C17orf112F2Z3M2 114 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 RPL24P83731 157 aaKnown RBP7.28□□□□□ -1.24
CIITA-201ENST00000324288 HSF5Q4G112 596 aaPredicted RBP7.28□□□□□ -1.24
CIITA-201ENST00000324288 GLIPR1L1Q6UWM5 242 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 C17orf78Q8N4C9 275 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 ARSGQ96EG1 525 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 OR6C1Q96RD1 312 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 GPR160Q9UJ42 338 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 TDRD15B5MCY1 1934 aaKnown RBP7.28□□□□□ -1.24
CIITA-201ENST00000324288 MANEAQ5SRI9 462 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 SLC16A13Q7RTY0 426 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 CASD1Q96PB1 797 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 UBL7Q96S82 380 aaPredicted RBP7.28□□□□□ -1.24
CIITA-201ENST00000324288 ABHD6Q9BV23 337 aa7.28□□□□□ -1.24
CIITA-201ENST00000324288 SETD1AO15047 1707 aaKnown RBP7.27□□□□□ -1.24
CIITA-201ENST00000324288 ALKBH6Q3KRA9 238 aa7.27□□□□□ -1.24
CIITA-201ENST00000324288 ZNF787Q6DD87 383 aa7.27□□□□□ -1.24
CIITA-201ENST00000324288 THNSL2Q86YJ6 484 aa7.27□□□□□ -1.24
CIITA-201ENST00000324288 TEX37Q96LM6 180 aa7.27□□□□□ -1.24
CIITA-201ENST00000324288 AMBRA1Q9C0C7 1298 aa7.27□□□□□ -1.24
CIITA-201ENST00000324288 MUC4Q99102 2169 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 PIPP12273 146 aaPredicted RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 CCR9P51686 369 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 PDE7AQ13946 482 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 MPPED2Q15777 294 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 RNASEKQ6P5S7 137 aaKnown RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 ZDHHC11Q9H8X9 412 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 MED12LQ86YW9 2145 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 A0A1W2PRV1 198 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 MCRIP1C9JLW8 97 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 GABRB1P18505 474 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 SLC19A1P41440 591 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 COL13A1Q5TAT6 717 aaPredicted RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 FAM166BA8MTA8 275 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 C1orf105O95561 183 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 C1QBP02746 253 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 HNRNPA1P09651 372 aaKnown RBP eCLIP7.27□□□□□ -1.25
CIITA-201ENST00000324288 ASCL1P50553 236 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 H3F3AP84243 136 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 ZNF92Q03936 586 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 ARL6IP1Q15041 203 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 TCEAL1Q15170 157 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 SLC39A5Q6ZMH5 540 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 AAED1Q7RTV5 226 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 WDR83Q9BRX9 315 aaKnown RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 GPR173Q9NS66 373 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 OR5V1Q9UGF6 321 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 ZNF207O43670 478 aaKnown RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 SSR4P51571 173 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 GP2P55259 537 aaKnown RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 ETFDHQ16134 617 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 LFNGQ8NES3 379 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 OR5B3Q8NH48 314 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 APH1BQ8WW43 257 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 RAB22AQ9UL26 194 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 NOSIPQ9Y314 301 aaKnown RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 FITM1A5D6W6 292 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 PRAMEF26H0Y7S4 382 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 EIF3FO00303 357 aaPredicted RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 SLC16A6O15403 523 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 SLC2A10O95528 541 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 HIST1H1TP22492 207 aaPredicted RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 ZNF140P52738 457 aaPredicted RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 PFN4Q8NHR9 129 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 NARFLQ9H6Q4 476 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 WSB2Q9NYS7 404 aaPredicted RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 TANC2Q9HCD6 1990 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 ZNF727A8MUV8 499 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 ZNF354AO60765 605 aaPredicted RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 YIF1AO95070 293 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 BMPR1AP36894 532 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 NPSR1Q6W5P4 371 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 RFLNAQ6ZTI6 216 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 TMEM99Q8N816 258 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 OR52B4Q8NGK2 314 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 CLMPQ9H6B4 373 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 RYDENQ9NUL5 291 aaKnown RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 PLEKHB1Q9UF11 243 aaPredicted RBP7.27□□□□□ -1.25
CIITA-201ENST00000324288 RBPJQ06330 500 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 SEMA3BQ13214 749 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 KCNAB1Q14722 419 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 EMC10Q5UCC4 262 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 GDF7Q7Z4P5 450 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 SPACA5Q96QH8 159 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 ATP1B1P05026 303 aa7.27□□□□□ -1.25
CIITA-201ENST00000324288 CCR7P32248 378 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms