RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SPATS1Q496A3 300 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 SPATA46Q5T0L3 261 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 SMARCD3Q6STE5 483 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 RINLQ6ZS11 566 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 RFPL4BQ6ZWI9 263 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 ZDHHC21Q8IVQ6 265 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 OR1J1Q8NGS3 322 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 SYNPRQ8TBG9 265 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 UBASH3BQ8TF42 649 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 GTF3AQ92664 365 aaKnown RBP13.97□□□□□ -0.17
LSM1-201ENST00000311351 NSL1Q96IY1 281 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 BCL2L14Q9BZR8 327 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 IL1RAPQ9NPH3 570 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 TAAR3PQ9P1P4 343 aa13.97□□□□□ -0.17
LSM1-201ENST00000311351 IGLV3-9A0A075B6K5 115 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 KIAA1324LA8MWY0 1029 aaPredicted RBP13.96□□□□□ -0.17
LSM1-201ENST00000311351 OR10H3O60404 316 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 ZNF250P15622 560 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 GUCA1AP43080 201 aaPredicted RBP13.96□□□□□ -0.17
LSM1-201ENST00000311351 RAD52P43351 418 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 SMIM11AP58511 58 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 DBPQ10586 325 aaPredicted RBP13.96□□□□□ -0.17
LSM1-201ENST00000311351 TMEM255AQ5JRV8 349 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 ELFN2Q5R3F8 820 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 GPR139Q6DWJ6 353 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 DPY19L2P2Q6ZN68 376 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 ZNF786Q8N393 782 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 OR52D1Q9H346 318 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 MS4A5Q9H3V2 200 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 VSX1Q9NZR4 365 aaPredicted RBP13.96□□□□□ -0.17
LSM1-201ENST00000311351 ACTR3BQ9P1U1 418 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 TIMM10BQ9Y5J6 103 aa13.96□□□□□ -0.17
LSM1-201ENST00000311351 TCRBV5S2A0A599 114 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 LRP5LA4QPB2 252 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 C12orf71A8MTZ7 269 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 SLC16A7O60669 478 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 MPZL1O95297 269 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 T-ENOLP0DO92 83 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 APEHP13798 732 aaKnown RBP13.95□□□□□ -0.18
LSM1-201ENST00000311351 ZNF23P17027 643 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 FPR3P25089 353 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 GIFP27352 417 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 MPV17P39210 176 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 CDKN2AP42771 156 aaKnown RBP13.95□□□□□ -0.18
LSM1-201ENST00000311351 MAGEB1P43366 347 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 PCBD1P61457 104 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 TRIP10Q15642 601 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 ADCK1Q86TW2 530 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 C11orf40Q8WZ69 217 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 TSSK2Q96PF2 358 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 SOX7Q9BT81 388 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 NUAK2Q9H093 628 aa13.95□□□□□ -0.18
LSM1-201ENST00000311351 COA3Q9Y2R0 106 aaPredicted RBP13.95□□□□□ -0.18
LSM1-201ENST00000311351 ATRQ13535 2644 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 DCTN6O00399 190 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 AHCYL1O43865 530 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 DOK2O60496 412 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 KHDRBS3O75525 346 aaKnown RBP13.94□□□□□ -0.18
LSM1-201ENST00000311351 GPANK1O95872 356 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 TXNDC12O95881 172 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 CALB2P22676 271 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 IL2RGP31785 369 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 GZMKP49863 264 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 RPS6KA3P51812 740 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 RIN1Q13671 783 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 CYB5R2Q6BCY4 276 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 PGBD2Q6P3X8 592 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 ALDH16A1Q8IZ83 802 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 OR9Q2Q8NGE9 314 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 ABHD4Q8TB40 342 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 SLC25A40Q8TBP6 338 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 SNX33Q8WV41 574 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 IPCEF1Q8WWN9 437 aaPredicted RBP13.94□□□□□ -0.18
LSM1-201ENST00000311351 MSI2Q96DH6 328 aaKnown RBP13.94□□□□□ -0.18
LSM1-201ENST00000311351 SAMD8Q96LT4 415 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 ERMAPQ96PL5 475 aaPredicted RBP13.94□□□□□ -0.18
LSM1-201ENST00000311351 SNX18Q96RF0 628 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 HINT3Q9NQE9 182 aaKnown RBP13.94□□□□□ -0.18
LSM1-201ENST00000311351 EIF3KQ9UBQ5 218 aaKnown RBP13.94□□□□□ -0.18
LSM1-201ENST00000311351 TMCC3Q9ULS5 477 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 LYVE1Q9Y5Y7 322 aa13.94□□□□□ -0.18
LSM1-201ENST00000311351 C17orf100A8MU93 164 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 LILRA1O75019 489 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 NGFP01138 241 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 COL8A2P25067 703 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 SLC6A6P31641 620 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 HTR5AP47898 357 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 GSSP48637 474 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 SELENOVP59797 346 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 MS4A2Q01362 244 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 SCRN3Q0VDG4 424 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 PPP1R8Q12972 351 aaKnown RBP13.93□□□□□ -0.18
LSM1-201ENST00000311351 RFX4Q33E94 735 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 LCN8Q6JVE9 175 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 ZNF620Q6ZNG0 422 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.93□□□□□ -0.18
LSM1-201ENST00000311351 SYT9Q86SS6 491 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 ZNF540Q8NDQ6 660 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 YIPF5Q969M3 257 aa13.93□□□□□ -0.18
LSM1-201ENST00000311351 CCDC124Q96CT7 223 aaKnown RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms