RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HYAL4Q2M3T9 481 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 SLC25A25Q6KCM7 469 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 FGD2Q7Z6J4 655 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 OR51A2Q8NGJ7 313 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 FAM3DQ96BQ1 224 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 DDIT4LQ96D03 193 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 GAL3ST1Q99999 423 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 MUC3AQ02505 3323 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 MEIKINA0A087WXM9 373 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 NAP1L6A6NFF2 107 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 GGT3PA6NGU5 568 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 A6NIZ1 184 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 ERVH48-1M5A8F1 160 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 SRSF10O75494 262 aaKnown RBP17.95■□□□□ 0.46
VPS53-201ENST00000291074 SELENOPP49908 381 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 DAP3P51398 398 aaKnown RBP17.95■□□□□ 0.46
VPS53-201ENST00000291074 RAP1BP61224 184 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 RAP1AP62834 184 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 ZP4Q12836 540 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 RAB11BQ15907 218 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 ELFN2Q5R3F8 820 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 PHF19Q5T6S3 580 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 ANKRD16Q6P6B7 361 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 LRFN4Q6PJG9 635 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 PIAS4Q8N2W9 510 aaPredicted RBP17.95■□□□□ 0.46
VPS53-201ENST00000291074 ST7LQ8TDW4 575 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 NOX3Q9HBY0 568 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 MYOTQ9UBF9 498 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 CGGBP1Q9UFW8 167 aaPredicted RBP17.95■□□□□ 0.46
VPS53-201ENST00000291074 PCDHGA5Q9Y5G8 931 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 TNRC6BQ9UPQ9 1833 aaKnown RBP17.95■□□□□ 0.46
VPS53-201ENST00000291074 LIPT2A6NK58 231 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 EIF1AXP47813 144 aaKnown RBP17.95■□□□□ 0.46
VPS53-201ENST00000291074 SUMO3P55854 103 aaPredicted RBP17.95■□□□□ 0.46
VPS53-201ENST00000291074 LYPD8Q6UX82 237 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 ZNF454Q8N9F8 522 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 OR1J4Q8NGS1 313 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 METTL7AQ9H8H3 244 aa17.95■□□□□ 0.46
VPS53-201ENST00000291074 SLC17A2O00624 439 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 LDOC1O95751 146 aaPredicted RBP17.94■□□□□ 0.46
VPS53-201ENST00000291074 ANXA7P20073 488 aaKnown RBP17.94■□□□□ 0.46
VPS53-201ENST00000291074 BIDP55957 195 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 PCGF3Q3KNV8 242 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 LUZP2Q86TE4 346 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 PPP1R3BQ86XI6 285 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 POC1BQ8TC44 478 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 CENPMQ9NSP4 180 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 CDV3Q9UKY7 258 aaKnown RBP17.94■□□□□ 0.46
VPS53-201ENST00000291074 R4GMQ9 66 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 TRAV18A0A075B6X5 111 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 TMEM272A0A1B0GTI8 110 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 ZNF41P51814 821 aaPredicted RBP17.94■□□□□ 0.46
VPS53-201ENST00000291074 MAP2K6P52564 334 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 MYBPHQ13203 477 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 PLPPR5Q32ZL2 321 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 BPHLQ86WA6 291 aaPredicted RBP17.94■□□□□ 0.46
VPS53-201ENST00000291074 OR4D10Q8NGI6 311 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 OR6S1Q8NH40 331 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 RNF138Q8WVD3 245 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 SLC25A44Q96H78 314 aaPredicted RBP17.94■□□□□ 0.46
VPS53-201ENST00000291074 G6PC2Q9NQR9 355 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 DLL4Q9NR61 685 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 ZNF275Q9NSD4 429 aaPredicted RBP17.94■□□□□ 0.46
VPS53-201ENST00000291074 FBXL2Q9UKC9 423 aa17.94■□□□□ 0.46
VPS53-201ENST00000291074 LOC107986453A0A1B0GWG9 222 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 MFSD13AQ14CX5 517 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 DNM1P46Q6ZS02 220 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 CREB3L2Q70SY1 520 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 Q7L0L9 218 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 OR5L2Q8NGL0 311 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 RANBP3Q9H6Z4 567 aaPredicted RBP17.93■□□□□ 0.46
VPS53-201ENST00000291074 SERINC1Q9NRX5 453 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 MYEF2Q9P2K5 600 aaKnown RBP17.93■□□□□ 0.46
VPS53-201ENST00000291074 B3GAT1Q9P2W7 334 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 CIB4A0PJX0 185 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 ZNF208O43345 1280 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 ZFAND5O76080 213 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 SCAND1P57086 179 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 FAM166AQ6J272 317 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 DNM1P34Q6PK57 102 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 OR13C3Q8NGS6 347 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 TTC9Q92623 222 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 OR52A1Q9UKL2 312 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 WIF1Q9Y5W5 379 aa17.93■□□□□ 0.46
VPS53-201ENST00000291074 LOC100289279A0A1B0GTE1 492 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 DCDC2BA2VCK2 349 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 H7C417 338 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 RBBP9O75884 186 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 TOXO94900 526 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 SPOCK1Q08629 439 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 CAMK2DQ13557 499 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 THRSPQ92748 146 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 METTL17Q9H7H0 456 aaPredicted RBP17.92■□□□□ 0.46
VPS53-201ENST00000291074 PRDM6Q9NQX0 595 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 PRMT8Q9NR22 394 aaPredicted RBP17.92■□□□□ 0.46
VPS53-201ENST00000291074 ALKBH4Q9NXW9 302 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 MTFP1Q9UDX5 166 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 A0A1W2PNR3 127 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 A0A1W2PPC1 479 aa17.92■□□□□ 0.46
VPS53-201ENST00000291074 MEN1O00255 615 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms