RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 RABIFP47224 123 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 OR1D4P47884 311 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 UBE2IP63279 158 aaKnown RBP9.06□□□□□ -0.96
LIG3-201ENST00000262327 MFGE8Q08431 387 aaPredicted RBP9.06□□□□□ -0.96
LIG3-201ENST00000262327 KLHL26Q53HC5 615 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 ASPHD2Q6ICH7 369 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 TSSK4Q6SA08 328 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 GSG1LQ6UXU4 331 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 MARCH3Q86UD3 253 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 C19orf47Q8N9M1 422 aaKnown RBP9.06□□□□□ -0.96
LIG3-201ENST00000262327 CLRN3Q8NCR9 226 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 PHYHIPQ92561 330 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 TSLPQ969D9 159 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 PNPLA2Q96AD5 504 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 FAM3DQ96BQ1 224 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 INTS14Q96SY0 518 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 SDHAF3Q9NRP4 125 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 FBXL3Q9UKT7 428 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 IGHV1OR15-9A0A0B4J2B8 117 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 FITM1A5D6W6 292 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 SCDO00767 359 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 CLDN4O14493 209 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 LMX1BO60663 402 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 SLC16A7O60669 478 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 APOC3P02656 99 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 GABRA1P14867 456 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 MAPK3P27361 379 aaPredicted RBP9.06□□□□□ -0.96
LIG3-201ENST00000262327 SPOCK1Q08629 439 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 GALNT16Q8N428 558 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 OR4S1Q8NGB4 309 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 RPS4Y2Q8TD47 263 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 HOXB13Q92826 284 aaPredicted RBP9.06□□□□□ -0.96
LIG3-201ENST00000262327 CMTM3Q96MX0 182 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 MFFQ9GZY8 342 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 SOHLH2Q9NX45 425 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 EDARQ9UNE0 448 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 B9D1Q9UPM9 204 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 ICOSLGO75144 302 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 UTS2O95399 124 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 IL5P05113 134 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 CD1AP06126 327 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 ASAH2BP0C7U1 165 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 PPP3CBP16298 524 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 PRSS3P35030 304 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 SSTP61278 116 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 SKP2Q13309 424 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 MOGAT2Q3SYC2 334 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 STEAP1BQ6NZ63 245 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 CD163Q86VB7 1156 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 ZNF615Q8N8J6 731 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 ZNF454Q8N9F8 522 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 ZSCAN1Q8NBB4 408 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 PMM1Q92871 262 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 C4orf45Q96LM5 186 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 PELOQ9BRX2 385 aaKnown RBP9.06□□□□□ -0.96
LIG3-201ENST00000262327 EXOSC3Q9NQT5 275 aaKnown RBP9.06□□□□□ -0.96
LIG3-201ENST00000262327 TAS2R4Q9NYW5 299 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 PFDN2Q9UHV9 154 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 KIF25Q9UIL4 384 aa9.06□□□□□ -0.96
LIG3-201ENST00000262327 MRPS33Q9Y291 106 aaKnown RBP9.06□□□□□ -0.96
LIG3-201ENST00000262327 C2orf72A6NCS6 295 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 SNRPGP15A8MWD9 76 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 ZNF264O43296 627 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 OR6A2O95222 327 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 RENP00797 406 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 FAUP35544 74 aaKnown RBP9.05□□□□□ -0.96
LIG3-201ENST00000262327 GFERP55789 205 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 GLYATL3Q5SZD4 288 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 ZNF660Q6AZW8 331 aaPredicted RBP9.05□□□□□ -0.96
LIG3-201ENST00000262327 ELP2Q6IA86 826 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 ANKRD16Q6P6B7 361 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 CADM4Q8NFZ8 388 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 ZNF417Q8TAU3 575 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 RLN3Q8WXF3 142 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 CYYR1Q96J86 154 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 LRFN5Q96NI6 719 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 CMKLR1Q99788 373 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 SLC19A3Q9BZV2 496 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 OR11A1Q9GZK7 315 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 SEMA6CQ9H3T2 930 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 GLS2Q9UI32 602 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 ATXN7L1Q9ULK2 861 aaPredicted RBP9.05□□□□□ -0.96
LIG3-201ENST00000262327 SIT1Q9Y3P8 196 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 PCDH15Q96QU1 1955 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 A0A1W2PPC4 97 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 CDC40O60508 579 aaKnown RBP eCLIP9.05□□□□□ -0.96
LIG3-201ENST00000262327 AMY2AP04746 511 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 AKAIN1P0CW23 69 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 CSRP1P21291 193 aaKnown RBP9.05□□□□□ -0.96
LIG3-201ENST00000262327 MNDAP41218 407 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 BIKQ13323 160 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 IL10RAQ13651 578 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 GK2Q14410 553 aaPredicted RBP9.05□□□□□ -0.96
LIG3-201ENST00000262327 RAB11BQ15907 218 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 SLC22A6Q4U2R8 563 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 ZNF595Q8IYB9 648 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 JAGN1Q8N5M9 183 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 OR1J4Q8NGS1 313 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 OR1S1Q8NH92 325 aa9.05□□□□□ -0.96
LIG3-201ENST00000262327 NANPQ8TBE9 248 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms