RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SLC39A11Q8N1S5 342 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 SECTM1Q8WVN6 248 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 PIK3IP1Q96FE7 263 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 CMTM3Q96MX0 182 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 LRIT1Q9P2V4 623 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 LRRK1Q38SD2 2015 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 F5P12259 2224 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 A0A087WV62 115 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 COLCA2A8K830 154 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 LMX1BO60663 402 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 SRPX2O60687 465 aaPredicted RBP12.98□□□□□ -0.33
SDC1-201ENST00000254351 LRP3O75074 770 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 GLCEO94923 617 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 TPT1P13693 172 aaKnown RBP12.98□□□□□ -0.33
SDC1-201ENST00000254351 ERN2Q76MJ5 926 aaKnown RBP12.98□□□□□ -0.33
SDC1-201ENST00000254351 GALNTL5Q7Z4T8 443 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 RNF141Q8WVD5 230 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 RHOVQ96L33 236 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 ZNF251Q9BRH9 671 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 ELOVL3Q9HB03 270 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 SERTAD3Q9UJW9 196 aa12.98□□□□□ -0.33
SDC1-201ENST00000254351 MRPS18BQ9Y676 258 aaKnown RBP12.98□□□□□ -0.33
SDC1-201ENST00000254351 A0A1W2PPH5 198 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 OR4C45A6NMZ5 311 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 SLC35G6P0C7Q6 338 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 RNF224P0DH78 156 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 HOXB1P14653 301 aaPredicted RBP12.97□□□□□ -0.33
SDC1-201ENST00000254351 NME1P15531 152 aaKnown RBP12.97□□□□□ -0.33
SDC1-201ENST00000254351 GPR143P51810 404 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 CEBPGP53567 150 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 ACTBP60709 375 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 ACTG1P63261 375 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 MICBQ29980 383 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 PDZD11Q5EBL8 140 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 RNASE10Q5GAN6 216 aaKnown RBP12.97□□□□□ -0.33
SDC1-201ENST00000254351 CDPF1Q6NVV7 123 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 ZNF704Q6ZNC4 412 aaPredicted RBP12.97□□□□□ -0.33
SDC1-201ENST00000254351 OR4C3Q8NH37 302 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 OR51F2Q8NH61 342 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 SPACA5Q96QH8 159 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 PFDN5Q99471 154 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 NRIP2Q9BQI9 281 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 SULT4A1Q9BR01 284 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 SERGEFQ9UGK8 458 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 SEC16AO15027 2179 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 CTSVO60911 334 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 FGF18O76093 207 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 SPARCP09486 303 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 RAB6AP20340 208 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 CMPK1P30085 196 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 HRH1P35367 487 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 PAPD4Q6PIY7 484 aaKnown RBP12.97□□□□□ -0.33
SDC1-201ENST00000254351 FAM24BQ8N5W8 94 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 ZSCAN4Q8NAM6 433 aaPredicted RBP12.97□□□□□ -0.33
SDC1-201ENST00000254351 SPACA7Q96KW9 195 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 NECAB3Q96P71 396 aaPredicted RBP12.97□□□□□ -0.33
SDC1-201ENST00000254351 B9D1Q9UPM9 204 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 SLC31A1O15431 190 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 B3GALT2O43825 422 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 PNPP00491 289 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 IFNA4P05014 189 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 EN2P19622 333 aaPredicted RBP12.97□□□□□ -0.33
SDC1-201ENST00000254351 HSD17B2P37059 387 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 DEFB110Q30KQ9 67 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 UQCC3Q6UW78 93 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 USP53Q70EK8 1073 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 GRASPQ7Z6J2 395 aaPredicted RBP12.97□□□□□ -0.33
SDC1-201ENST00000254351 PARGQ86W56 976 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 ZNF417Q8TAU3 575 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 MARCH1Q8TCQ1 289 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 GPX8Q8TED1 209 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 SUSD6Q92537 303 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 PHB2Q99623 299 aa12.97□□□□□ -0.33
SDC1-201ENST00000254351 DNAJB12Q9NXW2 375 aaKnown RBP12.97□□□□□ -0.33
SDC1-201ENST00000254351 LOC100289279A0A1B0GTE1 492 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 HIDE1A8MVS5 230 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 BRINP1O60477 761 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 AGR2O95994 175 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 CSTAP01040 98 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 RHOP08100 348 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 RBM34P42696 430 aaKnown RBP12.96□□□□□ -0.33
SDC1-201ENST00000254351 KIR3DL2P43630 455 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 SKP2Q13309 424 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 ITPRIPL2Q3MIP1 535 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 CCL4L1Q8NHW4 92 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 ZNF563Q8TA94 476 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 ZNF764Q96H86 408 aaPredicted RBP12.96□□□□□ -0.33
SDC1-201ENST00000254351 SLC41A2Q96JW4 573 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 KLHDC3Q9BQ90 382 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 OR5AC2Q9NZP5 309 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 ATXN7L1Q9ULK2 861 aaPredicted RBP12.96□□□□□ -0.33
SDC1-201ENST00000254351 DAPP1Q9UN19 280 aa12.96□□□□□ -0.33
SDC1-201ENST00000254351 C19orf53Q9UNZ5 99 aaPredicted RBP12.96□□□□□ -0.33
SDC1-201ENST00000254351 C9orf170A2RU37 121 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 EFCAB7A8K855 629 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 RNASEK-C17orf49H0YIS7 233 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 EIF1AYO14602 144 aaKnown RBP12.96□□□□□ -0.34
SDC1-201ENST00000254351 CSF2RAP15509 400 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 PSMB6P28072 239 aa12.96□□□□□ -0.34
SDC1-201ENST00000254351 CD96P40200 585 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms