RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ZXDBP98169 803 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 BAK1Q16611 211 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF648Q5T619 568 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 ANKRD16Q6P6B7 361 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SBSNQ6UWP8 590 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 C6orf15Q6UXA7 325 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 MAMDC4Q6UXC1 1216 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TOMM20LQ6UXN7 152 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 CPEB2Q7Z5Q1 589 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 GRASPQ7Z6J2 395 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 SERPINA11Q86U17 422 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PGBD5Q8N414 524 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF781Q8N8C0 355 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 DBF4BQ8NFT6 615 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR8J2Q8NGG1 315 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR5A2Q8NGI9 324 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR5M8Q8NGP6 311 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SH2D3AQ9BRG2 576 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 FAM103A1Q9BTL3 118 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 OR6C2Q9NZP2 312 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TMEM238LA0A1B0GVL6 79 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 C5orf52A6NGY3 159 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 A6NJY4 79 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TIMM23O14925 209 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 DENRO43583 198 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 TCF21O43680 179 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 GPRIN2O60269 458 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 NFYAP23511 347 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 RGRP47804 291 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 HLCSP50747 726 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR10A3P58181 314 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SF3A2Q15428 464 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 THEM4Q5T1C6 240 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PTRH1Q86Y79 214 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 OR8B3Q8NGG8 313 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR13G1Q8NGZ3 307 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZCCHC10Q8TBK6 192 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 C2CD4CQ8TF44 421 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 FBLIM1Q8WUP2 373 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SLC25A28Q96A46 364 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR8B2Q96RD0 313 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PIMREGQ9BSJ6 248 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 RTL8AQ9BWD3 113 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PRDM14Q9GZV8 571 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ARV1Q9H2C2 271 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 HEXA-AS1Q9H8Q6 139 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 NYNRINQ9P2P1 1898 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 DIP2BQ9P265 1576 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SLC16A5O15375 505 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TNFSF15O95150 251 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF25P17030 456 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 GM2AP17900 193 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 CCKARP32238 428 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 NOVP48745 357 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 DLX5P56178 289 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 LILRA4P59901 499 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 CSNK1G2P78368 415 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 MEDAGQ5VYS4 303 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 FAHD1Q6P587 224 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 DHRS13Q6UX07 377 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OVCH1Q7RTY7 1134 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SPRED1Q7Z699 444 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TGIF2LXQ8IUE1 241 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR1L6Q8NGR2 347 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR10Z1Q8NGY1 313 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ANKRD9Q96BM1 317 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 STARD4Q96DR4 205 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SGTBQ96EQ0 304 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ADGRG7Q96K78 797 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PLK3Q9H4B4 646 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZBTB20Q9HC78 741 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 FBXO8Q9NRD0 319 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TMEM140Q9NV12 185 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 RNF186Q9NXI6 227 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SMIM30A4D0T7 59 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 NDUFB3O43676 98 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 NDUFA2O43678 99 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 PCDH7O60245 1069 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 HLA-AP01891 365 aaKnown RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 SMIM10L2AP0DMW4 78 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SMIM10L2BP0DMW5 78 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 CTSCP53634 463 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 KCNAB2Q13303 367 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SGCAQ16586 387 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 LY6KQ17RY6 165 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 KRTCAP3Q53RY4 240 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 ZNF805Q5CZA5 627 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TMPRSS11FQ6ZWK6 438 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OLIG3Q7RTU3 272 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SGMS1Q86VZ5 419 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 LRRC25Q8N386 305 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 OR4D10Q8NGI6 311 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR51A4Q8NGJ6 313 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 OR51A2Q8NGJ7 313 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 HINT2Q9BX68 163 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 SMIM3Q9BZL3 60 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 RANGRFQ9HD47 186 aaPredicted RBP2.57□□□□□ -2
SCN1A-219ENST00000641575 CLCF1Q9UBD9 225 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 TUBD1Q9UJT1 453 aa2.57□□□□□ -2
SCN1A-219ENST00000641575 INSL5Q9Y5Q6 135 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms