RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 FCGR2AP12318 317 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 SLC18B1Q6NT16 456 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 GPR137Q96N19 417 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 AMELYQ99218 206 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 OR51E2Q9H255 320 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 GP6Q9HCN6 339 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 ZNF71Q9NQZ8 489 aaPredicted RBP16.29■□□□□ 0.2
CLN3-254ENST00000637050 PARPBPQ9NWS1 579 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 CLCF1Q9UBD9 225 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 MRM2Q9UI43 246 aaKnown RBP16.29■□□□□ 0.2
CLN3-254ENST00000637050 GNG8Q9UK08 70 aa16.29■□□□□ 0.2
CLN3-254ENST00000637050 SIRT4Q9Y6E7 314 aaPredicted RBP16.29■□□□□ 0.2
CLN3-254ENST00000637050 MED19A0JLT2 244 aaPredicted RBP16.28■□□□□ 0.2
CLN3-254ENST00000637050 MRPL33O75394 65 aaKnown RBP16.28■□□□□ 0.2
CLN3-254ENST00000637050 UPK3AO75631 287 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 SULT1C4O75897 302 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 ABHD16AO95870 558 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 CELP19835 753 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 CDAP32320 146 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 AQP6Q13520 282 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 TIMM50Q3ZCQ8 353 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 RIPPLY2Q5TAB7 128 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 Q8NA96 180 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 OR10H5Q8NGA6 315 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 TTYH2Q9BSA4 534 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 ABHD6Q9BV23 337 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 SEC61A2Q9H9S3 476 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 SLC24A3Q9HC58 644 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 POLE4Q9NR33 117 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 ACOXLQ9NUZ1 547 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 ANKRD11Q6UB99 2663 aaPredicted RBP16.28■□□□□ 0.2
CLN3-254ENST00000637050 PTPRQQ9UMZ3 2332 aa16.28■□□□□ 0.2
CLN3-254ENST00000637050 PNMA8CA0A1B0GUJ8 204 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 METTL15A6NJ78 407 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 PSMD9O00233 223 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 TMCC2O75069 709 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 TACSTD2P09758 323 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 PSMA1P25786 263 aaKnown RBP16.27■□□□□ 0.2
CLN3-254ENST00000637050 GBX2P52951 348 aaPredicted RBP16.27■□□□□ 0.2
CLN3-254ENST00000637050 ROM1Q03395 351 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 EIF2B1Q14232 305 aaKnown RBP16.27■□□□□ 0.2
CLN3-254ENST00000637050 ZNF324BQ6AW86 544 aaPredicted RBP16.27■□□□□ 0.2
CLN3-254ENST00000637050 FAM180AQ6UWF9 173 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 MCEMP1Q8IX19 187 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 ALDH16A1Q8IZ83 802 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 GPR137CQ8N3F9 429 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 OR8B4Q96RC9 309 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 LINC00470Q9BZP3 86 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 CALHM2Q9HA72 323 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 B3GAT2Q9NPZ5 323 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 CYB5R1Q9UHQ9 305 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 ST6GALNAC2Q9UJ37 374 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 STUB1Q9UNE7 303 aa16.27■□□□□ 0.2
CLN3-254ENST00000637050 SLC22A1O15245 554 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 OGG1O15527 345 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 ZNHIT1O43257 154 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 PLPP2O43688 288 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 GPX5O75715 221 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 KRT8P05787 483 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 OR8G3PP0DMU2 310 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 PCSK6P29122 969 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 GABRA5P31644 462 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 CRYBB2P43320 205 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 ZNF84P51523 738 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 LSM3P62310 102 aaKnown RBP16.27■□□□□ 0.19
CLN3-254ENST00000637050 SIRPAP78324 504 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 CCDC58Q4VC31 144 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 DMKNQ6E0U4 476 aaPredicted RBP16.27■□□□□ 0.19
CLN3-254ENST00000637050 RPTNQ6XPR3 784 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 FGD2Q7Z6J4 655 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 ST7LQ8TDW4 575 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 RNF166Q96A37 237 aaPredicted RBP16.27■□□□□ 0.19
CLN3-254ENST00000637050 CHCHD6Q9BRQ6 235 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 RBM24Q9BX46 236 aaKnown RBP16.27■□□□□ 0.19
CLN3-254ENST00000637050 SLCO5A1Q9H2Y9 848 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 PTTG2Q9NZH5 202 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 CLEC4AQ9UMR7 237 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 GRIP1Q9Y3R0 1128 aa16.27■□□□□ 0.19
CLN3-254ENST00000637050 HSPB2A8KAH6 182 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 AHRRA9YTQ3 701 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 TGM4P49221 684 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 VBP1P61758 197 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 LSM6P62312 80 aaKnown RBP16.26■□□□□ 0.19
CLN3-254ENST00000637050 RPS25P62851 125 aaKnown RBP16.26■□□□□ 0.19
CLN3-254ENST00000637050 NFATC3Q12968 1075 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 MRPL28Q13084 256 aaKnown RBP16.26■□□□□ 0.19
CLN3-254ENST00000637050 SPCS2Q15005 226 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 HSPB2Q16082 182 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 KRTCAP3Q53RY4 240 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 LIPNQ5VXI9 398 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 KCTD18Q6PI47 426 aaPredicted RBP16.26■□□□□ 0.19
CLN3-254ENST00000637050 GDPGP1Q6ZNW5 385 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 LINGO2Q7L985 606 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 FAM220AQ7Z4H9 259 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 DCXRQ7Z4W1 244 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 LINC00346Q8IVM7 164 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 ZNF679Q8IYX0 411 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 OR5M9Q8NGP3 310 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 OR52N5Q8NH56 324 aa16.26■□□□□ 0.19
CLN3-254ENST00000637050 CPT1CQ8TCG5 803 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms