RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 RAB2BQ8WUD1 216 aa17.77■□□□□ 0.44
CLN3-250ENST00000636839 ALKBH3Q96Q83 286 aaPredicted RBP17.77■□□□□ 0.44
CLN3-250ENST00000636839 DCLRE1CQ96SD1 692 aaKnown RBP17.77■□□□□ 0.44
CLN3-250ENST00000636839 DCUN1D5Q9BTE7 237 aa17.77■□□□□ 0.44
CLN3-250ENST00000636839 RBM24Q9BX46 236 aaKnown RBP17.77■□□□□ 0.44
CLN3-250ENST00000636839 SLCO1C1Q9NYB5 712 aa17.77■□□□□ 0.44
CLN3-250ENST00000636839 KLHL9Q9P2J3 617 aa17.77■□□□□ 0.44
CLN3-250ENST00000636839 AIREO43918 545 aa17.77■□□□□ 0.43
CLN3-250ENST00000636839 NDNFQ8TB73 568 aa17.77■□□□□ 0.43
CLN3-250ENST00000636839 HSD17B8Q92506 261 aa17.77■□□□□ 0.43
CLN3-250ENST00000636839 NDUFB11Q9NX14 153 aa17.77■□□□□ 0.43
CLN3-250ENST00000636839 PAQR5Q9NXK6 330 aaPredicted RBP17.77■□□□□ 0.43
CLN3-250ENST00000636839 NOSIPQ9Y314 301 aaKnown RBP17.77■□□□□ 0.43
CLN3-250ENST00000636839 SF3B6Q9Y3B4 125 aaKnown RBP17.77■□□□□ 0.43
CLN3-250ENST00000636839 SLC22A20A6NK97 555 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 RPP14O95059 124 aaKnown RBP17.76■□□□□ 0.43
CLN3-250ENST00000636839 ZNF823P16415 610 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 BLVRAP53004 296 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 EIF2B1Q14232 305 aaKnown RBP17.76■□□□□ 0.43
CLN3-250ENST00000636839 RPUSD3Q6P087 351 aaKnown RBP17.76■□□□□ 0.43
CLN3-250ENST00000636839 LRRN1Q6UXK5 716 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 NUFIP2Q7Z417 695 aaKnown RBP17.76■□□□□ 0.43
CLN3-250ENST00000636839 CISD2Q8N5K1 135 aaKnown RBP17.76■□□□□ 0.43
CLN3-250ENST00000636839 ABHD6Q9BV23 337 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 ULBP2Q9BZM5 246 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 CRLF2Q9HC73 371 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 RCE1Q9Y256 329 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 DVL2O14641 736 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 AKAP8O43823 692 aaKnown RBP17.76■□□□□ 0.43
CLN3-250ENST00000636839 SLC43A1O75387 559 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 CRYBB2P43320 205 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 ACSM1Q08AH1 577 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 SGCAQ16586 387 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 UFD1Q92890 307 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 TRIB1Q96RU8 372 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 TMED9Q9BVK6 235 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 IKZF2Q9UKS7 526 aa17.76■□□□□ 0.43
CLN3-250ENST00000636839 FREM1Q5H8C1 2179 aa17.75■□□□□ 0.43
CLN3-250ENST00000636839 CENPBD1B2RD01 187 aa17.75■□□□□ 0.43
CLN3-250ENST00000636839 ZNF701M0R085 212 aaPredicted RBP17.75■□□□□ 0.43
CLN3-250ENST00000636839 DHHO43323 396 aa17.75■□□□□ 0.43
CLN3-250ENST00000636839 ABHD16AO95870 558 aa17.75■□□□□ 0.43
CLN3-250ENST00000636839 ACTA2P62736 377 aa17.75■□□□□ 0.43
CLN3-250ENST00000636839 ACTG2P63267 376 aa17.75■□□□□ 0.43
CLN3-250ENST00000636839 TSPO2Q5TGU0 170 aa17.75■□□□□ 0.43
CLN3-250ENST00000636839 ARL9Q6T311 187 aa17.75■□□□□ 0.43
CLN3-250ENST00000636839 DCXRQ7Z4W1 244 aa17.75■□□□□ 0.43
CLN3-250ENST00000636839 ISYNA1Q9NPH2 558 aa17.75■□□□□ 0.43
CLN3-250ENST00000636839 MRPL33O75394 65 aaKnown RBP17.74■□□□□ 0.43
CLN3-250ENST00000636839 YES1P07947 543 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 SLC3A1Q07837 685 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 PCK2Q16822 640 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 PRR30Q53SZ7 412 aaPredicted RBP17.74■□□□□ 0.43
CLN3-250ENST00000636839 C10orf128Q5T292 105 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 SLC18B1Q6NT16 456 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 ADGRE4PQ86SQ3 457 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 SYS1Q8N2H4 156 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 ST7LQ8TDW4 575 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 MAP6Q96JE9 813 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 BCO1Q9HAY6 547 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 TRIM36Q9NQ86 728 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 POLE4Q9NR33 117 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 ST6GALNAC2Q9UJ37 374 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 LHFPL6Q9Y693 200 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 NOL3O60936 208 aaKnown RBP17.74■□□□□ 0.43
CLN3-250ENST00000636839 ZNF182P17025 639 aaPredicted RBP17.74■□□□□ 0.43
CLN3-250ENST00000636839 ZNF133P52736 654 aaPredicted RBP17.74■□□□□ 0.43
CLN3-250ENST00000636839 NANOS3P60323 173 aaKnown RBP17.74■□□□□ 0.43
CLN3-250ENST00000636839 LIPNQ5VXI9 398 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 LRRC18Q8N456 261 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 YIPF7Q8N8F6 280 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 PNPLA2Q96AD5 504 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 TMEM45BQ96B21 275 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 SARAFQ96BY9 339 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 CDADC1Q9BWV3 514 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 ELOVL3Q9HB03 270 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 EXOSC4Q9NPD3 245 aaKnown RBP17.74■□□□□ 0.43
CLN3-250ENST00000636839 SLC7A10Q9NS82 523 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 CLCF1Q9UBD9 225 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 CYB5R1Q9UHQ9 305 aa17.74■□□□□ 0.43
CLN3-250ENST00000636839 METTL15A6NJ78 407 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 GPR171O14626 319 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 HRGP04196 525 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 FOXG1P55316 489 aaPredicted RBP17.73■□□□□ 0.43
CLN3-250ENST00000636839 SIRPAP78324 504 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 FABP5Q01469 135 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 ZNF585AQ6P3V2 769 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 CFAP77Q6ZQR2 320 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 MCEMP1Q8IX19 187 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 GCNT2Q8N0V5 402 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 GPR137CQ8N3F9 429 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 OR10H5Q8NGA6 315 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 FNDC8Q8TC99 324 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 NABP1Q96AH0 204 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 GPR137Q96N19 417 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 ZNF416Q9BWM5 594 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 HDHD5Q9BXW7 423 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 C12orf49Q9H741 205 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 ASH2LQ9UBL3 628 aa17.73■□□□□ 0.43
CLN3-250ENST00000636839 TMEM14AQ9Y6G1 99 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms