RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PNPP00491 289 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 STOMP27105 288 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 LIPAP38571 399 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 AQP2P41181 271 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 CCL8P80075 99 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 ST3GAL3Q11203 375 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 ALKBH6Q3KRA9 238 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 ZNF718Q3SXZ3 478 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 ANKDD1AQ495B1 522 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 RABL3Q5HYI8 236 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 PABPC1L2AQ5JQF8 200 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 FAM205BPQ63HN1 556 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 ACSM5Q6NUN0 579 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 CPEB3Q8NE35 698 aaKnown RBP15.71■□□□□ 0.11
CLN3-241ENST00000635861 OR1J1Q8NGS3 322 aa15.71■□□□□ 0.11
CLN3-241ENST00000635861 NMD3Q96D46 503 aaKnown RBP15.71■□□□□ 0.11
CLN3-241ENST00000635861 METTL17Q9H7H0 456 aaPredicted RBP15.71■□□□□ 0.11
CLN3-241ENST00000635861 EIF3KQ9UBQ5 218 aaKnown RBP15.71■□□□□ 0.11
CLN3-241ENST00000635861 CLDN25C9JDP6 229 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 WNT9BO14905 357 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 ICMTO60725 284 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 IGHMP01871 453 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 GCH1P30793 250 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 PIN1Q13526 163 aaPredicted RBP15.7■□□□□ 0.1
CLN3-241ENST00000635861 THEM4Q5T1C6 240 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 FAM27BQ5VT28 67 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 ALDH16A1Q8IZ83 802 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 PCYOX1LQ8NBM8 494 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 ZNF418Q8TF45 676 aaPredicted RBP15.7■□□□□ 0.1
CLN3-241ENST00000635861 NABP1Q96AH0 204 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 ELMOD3Q96FG2 381 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 TIMD4Q96H15 378 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 POM121L2Q96KW2 1035 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 ZNF583Q96ND8 569 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 TSPAN32Q96QS1 320 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 WACQ9BTA9 647 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 MYLK2Q9H1R3 596 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 OR51B6Q9H340 312 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 OCEL1Q9H607 264 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 ZNF665Q9H7R5 613 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 SAP30LQ9HAJ7 183 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 SAR1AQ9NR31 198 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 CYSLTR2Q9NS75 346 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 UGT2A1Q9Y4X1 527 aa15.7■□□□□ 0.1
CLN3-241ENST00000635861 FAM220BPB1ANY3 271 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 SLC2A10O95528 541 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 ZNF32P17041 273 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 GUCA1AP43080 201 aaPredicted RBP15.69■□□□□ 0.1
CLN3-241ENST00000635861 ERVS71-1P61550 626 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 ELF3P78545 371 aaPredicted RBP15.69■□□□□ 0.1
CLN3-241ENST00000635861 SLC3A1Q07837 685 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 CD47Q08722 323 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 BNIP1Q12981 228 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 HFEQ30201 348 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 ALG10Q5BKT4 473 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 MBNL2Q5VZF2 373 aaKnown RBP15.69■□□□□ 0.1
CLN3-241ENST00000635861 USP43Q70EL4 1123 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 ICA1LQ8NDH6 482 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 SEMA6DQ8NFY4 1073 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 HDAC2Q92769 488 aaKnown RBP15.69■□□□□ 0.1
CLN3-241ENST00000635861 RAB1CQ92928 201 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 PRRC1Q96M27 445 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 RBP7Q96R05 134 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 G6PC2Q9NQR9 355 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 GID8Q9NWU2 228 aa15.69■□□□□ 0.1
CLN3-241ENST00000635861 PLSCR5A0PG75 271 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 J3QLI3 93 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 MRASO14807 208 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 TPD52L2O43399 206 aaKnown RBP15.68■□□□□ 0.1
CLN3-241ENST00000635861 CDC14BO60729 498 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 CCDC22O60826 627 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 ATP6V1G2O95670 118 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 ADH4P08319 380 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 CST2P09228 141 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 GATA3P23771 443 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 GDI2P50395 445 aaKnown RBP15.68■□□□□ 0.1
CLN3-241ENST00000635861 ZNF81P51508 661 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 RPL27P61353 136 aaKnown RBP15.68■□□□□ 0.1
CLN3-241ENST00000635861 PCBD1P61457 104 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 CYBRD1Q53TN4 286 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 ZMAT1Q5H9K5 638 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 SLC25A47Q6Q0C1 308 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 MOSPD2Q8NHP6 518 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 LZICQ8WZA0 190 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 DIRC2Q96SL1 478 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 LPAR2Q9HBW0 351 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 AP3M1Q9Y2T2 418 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 A0A0G2JMP0 313 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 A0A0X1KG70 313 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 TNFRSF1BP20333 461 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 CCNOP22674 350 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 CDAP32320 146 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 KDELR2P33947 212 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 OR1E2P47887 323 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 MMP15P51511 669 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 SELENOWP63302 87 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 FOXL2NBQ6ZUU3 175 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 USP51Q70EK9 711 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 SYT9Q86SS6 491 aa15.68■□□□□ 0.1
CLN3-241ENST00000635861 OR4M2Q8NGB6 313 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms