RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 CATSPERDQ86XM0 798 aa19.69■□□□□ 0.74
PNKP-220ENST00000627232 RAB43Q86YS6 212 aa19.69■□□□□ 0.74
PNKP-220ENST00000627232 ZNF671Q8TAW3 534 aa19.69■□□□□ 0.74
PNKP-220ENST00000627232 ST7LQ8TDW4 575 aa19.69■□□□□ 0.74
PNKP-220ENST00000627232 GNRHR2Q96P88 292 aa19.69■□□□□ 0.74
PNKP-220ENST00000627232 WACQ9BTA9 647 aa19.69■□□□□ 0.74
PNKP-220ENST00000627232 FOXJ2Q9P0K8 574 aa19.69■□□□□ 0.74
PNKP-220ENST00000627232 PCSK5Q92824 1860 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 LINC00854A0A1B0GVQ3 168 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 TRABD2BA6NFA1 517 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 SRSF10O75494 262 aaKnown RBP19.68■□□□□ 0.74
PNKP-220ENST00000627232 PRKAR1AP10644 381 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 ZNF43P17038 809 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 MAGEB1P43366 347 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 SOX2P48431 317 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 H3F3AP84243 136 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 UBE2NLQ5JXB2 153 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 ACER2Q5QJU3 275 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 RAET1LQ5VY80 246 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 SPATC1Q76KD6 591 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 LRRTM1Q86UE6 522 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 OR10H5Q8NGA6 315 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 ORAI1Q96D31 301 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 ZC3HAV1LQ96H79 300 aaKnown RBP19.68■□□□□ 0.74
PNKP-220ENST00000627232 NEDD4LQ96PU5 975 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 ANKRD10Q9NXR5 420 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 NPAP1Q9NZP6 1156 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 PCDHGA9Q9Y5G4 932 aaKnown RBP19.68■□□□□ 0.74
PNKP-220ENST00000627232 R4GMQ9 66 aa19.68■□□□□ 0.74
PNKP-220ENST00000627232 OR2M5A3KFT3 312 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 ZNF814B7Z6K7 855 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 TERTO14746 1132 aaKnown RBP19.67■□□□□ 0.74
PNKP-220ENST00000627232 EIF1BO60739 113 aaKnown RBP19.67■□□□□ 0.74
PNKP-220ENST00000627232 SLC43A1O75387 559 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 CALCBP10092 127 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 LAP3P28838 519 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 SRD5A2P31213 254 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 MAP2K3P46734 347 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 INPP1P49441 399 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 PITPNAQ00169 270 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 OR7E24Q6IFN5 339 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 JMJD6Q6NYC1 403 aaPredicted RBP19.67■□□□□ 0.74
PNKP-220ENST00000627232 SLC25A47Q6Q0C1 308 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 DCXRQ7Z4W1 244 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 RDH10Q8IZV5 341 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 ZNF433Q8N7K0 673 aaPredicted RBP19.67■□□□□ 0.74
PNKP-220ENST00000627232 MCHR2Q969V1 340 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 JSRP1Q96MG2 331 aaPredicted RBP19.67■□□□□ 0.74
PNKP-220ENST00000627232 SMAD5Q99717 465 aaKnown RBP19.67■□□□□ 0.74
PNKP-220ENST00000627232 PIGQQ9BRB3 760 aa19.67■□□□□ 0.74
PNKP-220ENST00000627232 GJE1A6NN92 205 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 UBL3O95164 117 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 PNPP00491 289 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 NR2C1P13056 603 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 RAC1P63000 192 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 MDGA2Q7Z553 956 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 GPAT4Q86UL3 456 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 OR10AC1Q8NH08 325 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 LGALS14Q8TCE9 139 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 C11orf40Q8WZ69 217 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 TMEM106AQ96A25 262 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 RFT1Q96AA3 541 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 NAA11Q9BSU3 229 aaPredicted RBP19.66■□□□□ 0.74
PNKP-220ENST00000627232 CAMK2AQ9UQM7 478 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 A0A0B4J203 849 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 G3V3Y1 287 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 VAMP5O95183 116 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 DLSTP36957 453 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 SCAND1P57086 179 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 CSNK2A1P68400 391 aaPredicted RBP19.66■□□□□ 0.74
PNKP-220ENST00000627232 MFGE8Q08431 387 aaPredicted RBP19.66■□□□□ 0.74
PNKP-220ENST00000627232 CAMK2DQ13557 499 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 HIST3H3Q16695 136 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 HES5Q5TA89 166 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 AGAP6Q5VW22 663 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 B3GNTL1Q67FW5 361 aaPredicted RBP19.66■□□□□ 0.74
PNKP-220ENST00000627232 UBQLNLQ8IYU4 475 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 ENKURQ8TC29 256 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 RNF133Q8WVZ7 376 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 TSEN15Q8WW01 171 aaKnown RBP19.66■□□□□ 0.74
PNKP-220ENST00000627232 AGAP4Q96P64 663 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 B3GNT4Q9C0J1 378 aa19.66■□□□□ 0.74
PNKP-220ENST00000627232 RBFOX1Q9NWB1 397 aaKnown RBP19.66■□□□□ 0.74
PNKP-220ENST00000627232 KIAA1549Q9HCM3 1950 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 ZNF726A6NNF4 738 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 LYRM1O43325 122 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 DNPH1O43598 174 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 TLX3O43711 291 aaPredicted RBP19.65■□□□□ 0.74
PNKP-220ENST00000627232 WNT11O96014 354 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 ADRA2CP18825 462 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 CFPP27918 469 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 DCTDP32321 178 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 NUBP1P53384 320 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 POU4F3Q15319 338 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 LINC00346Q8IVM7 164 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 HPS1Q92902 700 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 TRIM63Q969Q1 353 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 THAP7Q9BT49 309 aaPredicted RBP19.65■□□□□ 0.74
PNKP-220ENST00000627232 CYB5R1Q9UHQ9 305 aa19.65■□□□□ 0.74
PNKP-220ENST00000627232 SLC22A13Q9Y226 551 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms