RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ARFGEF3Q5TH69 2177 aa13.8□□□□□ -0.2
BRCA1-228ENST00000618469 IQCMA0A1B0GVH7 501 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 SLC22A23A1A5C7 686 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 PRSS37A4D1T9 235 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 RNF223E7ERA6 249 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 PPP1R3DO95685 299 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 MMP7P09237 267 aaPredicted RBP13.79□□□□□ -0.2
BRCA1-228ENST00000618469 CCL2P13500 99 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 ZNF32P17041 273 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 RPS6KA3P51812 740 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 RPS23P62266 143 aaKnown RBP13.79□□□□□ -0.2
BRCA1-228ENST00000618469 PLP2Q04941 152 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 TBC1D28Q2M2D7 210 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 DNAL1Q4LDG9 190 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 FAM98BQ52LJ0 330 aaKnown RBP13.79□□□□□ -0.2
BRCA1-228ENST00000618469 PABPC1L2AQ5JQF8 200 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 GPR139Q6DWJ6 353 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 PGBD2Q6P3X8 592 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 DPY19L2P2Q6ZN68 376 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 FOXL2NBQ6ZUU3 175 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 PAQR4Q8N4S7 273 aaPredicted RBP13.79□□□□□ -0.2
BRCA1-228ENST00000618469 OR9Q2Q8NGE9 314 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 SORCS2Q96PQ0 1159 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 VRK1Q99986 396 aaPredicted RBP13.79□□□□□ -0.2
BRCA1-228ENST00000618469 TRIM15Q9C019 465 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 SYT4Q9H2B2 425 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 OR51B6Q9H340 312 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 OR52D1Q9H346 318 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 CDH20Q9HBT6 801 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 CMAHPQ9Y471 501 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 IER3IP1Q9Y5U9 82 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 FKBP7Q9Y680 259 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 CR1P17927 2039 aa13.79□□□□□ -0.2
BRCA1-228ENST00000618469 VSTM5A8MXK1 200 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 TNFRSF11BO00300 401 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 GYG2O15488 501 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 MGRN1O60291 552 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 KRT36O76013 467 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 LY6HO94772 140 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 FAM157BP0CG42 384 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 CTLA4P16410 223 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 MSR1P21757 451 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 LAP3P28838 519 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 SLC6A6P31641 620 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 GUCA1AP43080 201 aaPredicted RBP13.78□□□□□ -0.2
BRCA1-228ENST00000618469 PPOXP50336 477 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 EFNA4P52798 201 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 CLEC2AQ6UVW9 174 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 DNM1P46Q6ZS02 220 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 ADCK1Q86TW2 530 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 ZNF525Q8N782 197 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 FOXN4Q96NZ1 517 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 BTBD10Q9BSF8 475 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 RERGLQ9H628 205 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 DYNLRB1Q9NP97 96 aa13.78□□□□□ -0.2
BRCA1-228ENST00000618469 IMPA2O14732 288 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 PTHP01270 115 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 APEX1P27695 318 aaKnown RBP13.77□□□□□ -0.21
BRCA1-228ENST00000618469 APLNRP35414 380 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 GLRXP35754 106 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 GSSP48637 474 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 PPP1R8Q12972 351 aaKnown RBP13.77□□□□□ -0.21
BRCA1-228ENST00000618469 TSPAN31Q12999 210 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 MSMPQ1L6U9 139 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 FAM27BQ5VT28 67 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 C1orf94Q6P1W5 598 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 ZNF620Q6ZNG0 422 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 PTCHD4Q6ZW05 846 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 OR4C15Q8NGM1 316 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 OR1J2Q8NGS2 313 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 AKR7LQ8NHP1 331 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 GNPDA2Q8TDQ7 276 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 MRPL24Q96A35 216 aaKnown RBP13.77□□□□□ -0.21
BRCA1-228ENST00000618469 ERMAPQ96PL5 475 aaPredicted RBP13.77□□□□□ -0.21
BRCA1-228ENST00000618469 SYT3Q9BQG1 590 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 IFT27Q9BW83 186 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 MRPL37Q9BZE1 423 aaKnown RBP13.77□□□□□ -0.21
BRCA1-228ENST00000618469 REEP1Q9H902 201 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 EMC7Q9NPA0 242 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 POLE4Q9NR33 117 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 VNN3Q9NY84 501 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 FZR1Q9UM11 496 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 SAMHD1Q9Y3Z3 626 aaKnown RBP13.77□□□□□ -0.21
BRCA1-228ENST00000618469 U3KQV3 271 aa13.77□□□□□ -0.21
BRCA1-228ENST00000618469 ABCA1O95477 2261 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 IGHV4-30-2A0A087WSY4 118 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 ACOT8O14734 319 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 AHCYL1O43865 530 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 SLC16A7O60669 478 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 CCNB2O95067 398 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 SNAP29O95721 258 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 CST2P09228 141 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 RAP2AP10114 183 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 CCNOP22674 350 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 ENDOGQ14249 297 aaKnown RBP13.76□□□□□ -0.21
BRCA1-228ENST00000618469 RFX4Q33E94 735 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 JAZF1Q86VZ6 243 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 ICA1LQ8NDH6 482 aa13.76□□□□□ -0.21
BRCA1-228ENST00000618469 CPEB3Q8NE35 698 aaKnown RBP13.76□□□□□ -0.21
BRCA1-228ENST00000618469 POP5Q969H6 163 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms