RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 ERFP50548 548 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 CLRN1P58418 232 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 MRPS34P82930 218 aaKnown RBP8.95□□□□□ -0.98
LIG1-213ENST00000596672 PSG4Q00888 419 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 PRKCDQ05655 676 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 TOP3AQ13472 1001 aaPredicted RBP8.95□□□□□ -0.98
LIG1-213ENST00000596672 ENDOGQ14249 297 aaKnown RBP8.95□□□□□ -0.98
LIG1-213ENST00000596672 SEC23BQ15437 767 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 C1orf146Q5VVC0 180 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 FOXL2NBQ6ZUU3 175 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 HIST3H2AQ7L7L0 130 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 SLC16A14Q7RTX9 510 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 OFCC1Q8IZS5 231 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 FAM156AQ8NDB6 213 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 SPATA3Q8NHX4 192 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 RASSF5Q8WWW0 418 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 HIST1H2ACQ93077 130 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 HSH2DQ96JZ2 352 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 POM121L2Q96KW2 1035 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 C7orf34Q96L11 122 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 FUZQ9BT04 418 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 ZNF416Q9BWM5 594 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 POLR2J2Q9GZM3 115 aaKnown RBP8.95□□□□□ -0.98
LIG1-213ENST00000596672 POLR2J3Q9H1A7 115 aaKnown RBP8.95□□□□□ -0.98
LIG1-213ENST00000596672 POFUT1Q9H488 388 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 MOV10Q9HCE1 1003 aaKnown RBP8.95□□□□□ -0.98
LIG1-213ENST00000596672 DYNLRB1Q9NP97 96 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 SPAG4Q9NPE6 437 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 DUSP13Q9UII6 198 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 MED31Q9Y3C7 131 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 ADAM18Q9Y3Q7 739 aa8.95□□□□□ -0.98
LIG1-213ENST00000596672 TANC2Q9HCD6 1990 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 A0A1W2PRG6 482 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 NPIPB13A6NJU9 1138 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 NPIPB4C9JG80 1138 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 M0R233 179 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 PTP4A3O75365 173 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 DIRAS1O95057 198 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 SERPINA1P01009 418 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 TGFAP01135 160 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 IGHMP01871 453 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 LAP3P28838 519 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 GPR4P46093 362 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 UCP2P55851 309 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 CTXN1P60606 82 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 RPL27P61353 136 aaKnown RBP8.94□□□□□ -0.98
LIG1-213ENST00000596672 LMO4P61968 165 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 ERVK-25P63136 954 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 RIPK1Q13546 671 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 CCNIQ14094 377 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 CR1LQ2VPA4 569 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 ALG10Q5BKT4 473 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 SAMD4BQ5PRF9 694 aaKnown RBP8.94□□□□□ -0.98
LIG1-213ENST00000596672 SPATA46Q5T0L3 261 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 THSD4Q6ZMP0 1018 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 RFPL4BQ6ZWI9 263 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 FAM122BQ7Z309 247 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 CLDND2Q8NHS1 167 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 SLC7A13Q8TCU3 470 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 Q96M85 177 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 BEX2Q9BXY8 128 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 SIAEQ9HAT2 523 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 ZNF275Q9NSD4 429 aaPredicted RBP8.94□□□□□ -0.98
LIG1-213ENST00000596672 DCAF16Q9NXF7 216 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 TAAR3PQ9P1P4 343 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 ABCD2Q9UBJ2 740 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 CD300AQ9UGN4 299 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 CDC42EP3Q9UKI2 254 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 POMPQ9Y244 141 aa8.94□□□□□ -0.98
LIG1-213ENST00000596672 DYSFO75923 2080 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 TRBV4-1A0A0J9YWV2 114 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 RNF212BA8MTL3 300 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 CENPBD1B2RD01 187 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 MPZL1O95297 269 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 ATP6V1G2O95670 118 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 SNAP29O95721 258 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 ZNF682O95780 498 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 GPANK1O95872 356 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 AVPP01185 164 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 LIMS1P48059 325 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 CDH15P55291 814 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 MS4A2Q01362 244 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 GLO1Q04760 184 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 ST3GAL3Q11203 375 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 SGCAQ16586 387 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 NRN1LQ496H8 165 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 MESTQ5EB52 335 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 FAM27BQ5VT28 67 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 FAM166AQ6J272 317 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 ZNF774Q6NX45 483 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 PODNL1Q6PEZ8 512 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 C1orf229Q6ZS94 237 aaPredicted RBP8.93□□□□□ -0.98
LIG1-213ENST00000596672 MARS2Q96GW9 593 aaKnown RBP8.93□□□□□ -0.98
LIG1-213ENST00000596672 OR2H1Q9GZK4 316 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 NARFLQ9H6Q4 476 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 RNF121Q9H920 327 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 NMNAT1Q9HAN9 279 aaPredicted RBP8.93□□□□□ -0.98
LIG1-213ENST00000596672 MYOZ1Q9NP98 299 aaPredicted RBP8.93□□□□□ -0.98
LIG1-213ENST00000596672 EMC7Q9NPA0 242 aa8.93□□□□□ -0.98
LIG1-213ENST00000596672 TREM2Q9NZC2 230 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms