RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 RPL4P36578 427 aaKnown RBP10.77□□□□□ -0.69
UPF1-203ENST00000594504 RAP1BP61224 184 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 RAP1AP62834 184 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 RUNX1T1Q06455 604 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 PIGFQ07326 219 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 TOP3AQ13472 1001 aaPredicted RBP10.77□□□□□ -0.69
UPF1-203ENST00000594504 TRIP10Q15642 601 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 HIST3H3Q16695 136 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 MSMPQ1L6U9 139 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 CR1LQ2VPA4 569 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 C3orf36Q3SXR2 165 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 KRT80Q6KB66 452 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 C1orf94Q6P1W5 598 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 ASRGL1Q7L266 308 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 ZNF627Q7L945 461 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 IGFN1Q86VF2 1251 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 FAM169BQ8N8A8 192 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 NUP37Q8NFH4 326 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 OR4C15Q8NGM1 316 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 MS4A3Q96HJ5 214 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 GPX7Q96SL4 187 aaPredicted RBP10.77□□□□□ -0.69
UPF1-203ENST00000594504 GPA33Q99795 319 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 MRPL13Q9BYD1 178 aaKnown RBP10.77□□□□□ -0.69
UPF1-203ENST00000594504 TPK1Q9H3S4 243 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 MOV10Q9HCE1 1003 aaKnown RBP10.77□□□□□ -0.69
UPF1-203ENST00000594504 MYOZ1Q9NP98 299 aaPredicted RBP10.77□□□□□ -0.69
UPF1-203ENST00000594504 ZNF346Q9UL40 294 aaKnown RBP10.77□□□□□ -0.69
UPF1-203ENST00000594504 POFUT2Q9Y2G5 429 aa10.77□□□□□ -0.69
UPF1-203ENST00000594504 SAMHD1Q9Y3Z3 626 aaKnown RBP10.77□□□□□ -0.69
UPF1-203ENST00000594504 DHHO43323 396 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 ENTPD5O75356 428 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 TRMUO75648 421 aaKnown RBP10.76□□□□□ -0.69
UPF1-203ENST00000594504 CCNB2O95067 398 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 HLA-HP01893 362 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 ADRA2AP08913 450 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 ZNF26P17031 533 aaPredicted RBP10.76□□□□□ -0.69
UPF1-203ENST00000594504 ARR3P36575 388 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 GSSP48637 474 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 TSPAN31Q12999 210 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 SNTB2Q13425 540 aaKnown RBP10.76□□□□□ -0.69
UPF1-203ENST00000594504 DAG1Q14118 895 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 C1orf146Q5VVC0 180 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 PGBD2Q6P3X8 592 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 LRFN4Q6PJG9 635 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 SMARCD3Q6STE5 483 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 CCDC36Q8IYA8 594 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 SYT14Q8NB59 555 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 PAPD5Q8NDF8 572 aaKnown RBP10.76□□□□□ -0.69
UPF1-203ENST00000594504 ZNF519Q8TB69 540 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 FANK1Q8TC84 345 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 FNDC8Q8TC99 324 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 GNPDA2Q8TDQ7 276 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 C1orf159Q96HA4 380 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 TSPAN32Q96QS1 320 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 FOXB1Q99853 325 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 ALG12Q9BV10 488 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 ZNF442Q9H7R0 627 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 SMURF2Q9HAU4 748 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 VNN3Q9NY84 501 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 B3GNT2Q9NY97 397 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 GRHPRQ9UBQ7 328 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 U3KQV3 271 aa10.76□□□□□ -0.69
UPF1-203ENST00000594504 GNGT2O14610 69 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 FKBP6O75344 327 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 CIB2O75838 187 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 QDPRP09417 244 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 CD79AP11912 226 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 GIFP27352 417 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 THBS2P35442 1172 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 ERFP50548 548 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 ZNF133P52736 654 aaPredicted RBP10.75□□□□□ -0.69
UPF1-203ENST00000594504 FXYD6P3P58550 94 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 ERVK-25P63136 954 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 MICAQ29983 383 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 GPR139Q6DWJ6 353 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 ZNF770Q6IQ21 691 aaPredicted RBP10.75□□□□□ -0.69
UPF1-203ENST00000594504 THSD4Q6ZMP0 1018 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 ZNF813Q6ZN06 617 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 DPY19L2P2Q6ZN68 376 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 FAM122BQ7Z309 247 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 OR9Q2Q8NGE9 314 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 UBASH3BQ8TF42 649 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 NEU4Q8WWR8 484 aaPredicted RBP10.75□□□□□ -0.69
UPF1-203ENST00000594504 HDAC2Q92769 488 aaKnown RBP10.75□□□□□ -0.69
UPF1-203ENST00000594504 MCHR2Q969V1 340 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 ZNF75AQ96N20 296 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 SNX18Q96RF0 628 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 MRPL37Q9BZE1 423 aaKnown RBP10.75□□□□□ -0.69
UPF1-203ENST00000594504 DYNLRB1Q9NP97 96 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 NRIP3Q9NQ35 241 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 ADAM18Q9Y3Q7 739 aa10.75□□□□□ -0.69
UPF1-203ENST00000594504 VSTM5A8MXK1 200 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 XKRYO14609 159 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 AHCYL1O43865 530 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 TACSTD2P09758 323 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 PATE4P0C8F1 98 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 B4GALT1P15291 398 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 NR4A1P22736 598 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 COL8A2P25067 703 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 APEX1P27695 318 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms