RNA–Protein interactions for RNA: ENST00000583732.1

SREBF1-222, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 4

Gene SREBF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-222	ENST00000583732	SIAE	Q9HAT2	523 aa		12.86	□□□□□ -0.35
SREBF1-222	ENST00000583732	INTS9	Q9NV88	658 aa	Known RBP	12.86	□□□□□ -0.35
SREBF1-222	ENST00000583732	EIF3K	Q9UBQ5	218 aa	Known RBP	12.86	□□□□□ -0.35
SREBF1-222	ENST00000583732	RIMS3	Q9UJD0	308 aa		12.86	□□□□□ -0.35
SREBF1-222	ENST00000583732	LOC100509620	A0A075B734	347 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	PLSCR5	A0PG75	271 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	TMEM89	A2RUT3	159 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	CENPBD1	B2RD01	187 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	OR5F1	O95221	314 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	RBMX	P38159	391 aa	Known RBP	12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	RBM34	P42696	430 aa	Known RBP	12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	OR1E2	P47887	323 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	ZNF133	P52736	654 aa	Predicted RBP	12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	PSG4	Q00888	419 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	LAPTM4A	Q15012	233 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	CCDC80	Q76M96	950 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	IGFN1	Q86VF2	1251 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	CLDN22	Q8N7P3	220 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	MARS2	Q96GW9	593 aa	Known RBP	12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	JMJD8	Q96S16	334 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	ARHGAP32	A7KAX9	2087 aa		12.85	□□□□□ -0.35
SREBF1-222	ENST00000583732	TENM1	Q9UKZ4	2725 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732		A0A0G2JND7	137 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732		A0A1W2PPL8	197 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	FBP2	O00757	339 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	WIPF1	O43516	503 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	LAP3	P28838	519 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	COMP	P49747	757 aa	Predicted RBP	12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	MMP15	P51511	669 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	ARFIP2	P53365	341 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	TAF11	Q15544	211 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	LRRC23	Q53EV4	343 aa	Predicted RBP	12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	SPRN	Q5BIV9	151 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	ALG10	Q5BKT4	473 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	FAM209A	Q5JX71	171 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	NANOGP8	Q6NSW7	305 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	SLC25A47	Q6Q0C1	308 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	USP43	Q70EL4	1123 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	MICU2	Q8IYU8	434 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	NANP	Q8TBE9	248 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	KLF14	Q8TD94	323 aa	Predicted RBP	12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	NMD3	Q96D46	503 aa	Known RBP	12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	WNT5B	Q9H1J7	359 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	C7orf69	Q9H7B7	122 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	MSL2	Q9HCI7	577 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	ESM1	Q9NQ30	184 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	DCAF16	Q9NXF7	216 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	STX18	Q9P2W9	335 aa	Known RBP	12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	BAG5	Q9UL15	447 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732	MED31	Q9Y3C7	131 aa		12.84	□□□□□ -0.35
SREBF1-222	ENST00000583732		J3QLI3	93 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	IFI30	P13284	250 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	PPP1CB	P62140	327 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	CYLC2	Q14093	348 aa	Predicted RBP	12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	ZNF774	Q6NX45	483 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	ST7L	Q8TDW4	575 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	TSPEAR	Q8WU66	669 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	ZMYND19	Q96E35	227 aa	Predicted RBP	12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	MAGEB18	Q96M61	343 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	DCLRE1C	Q96SD1	692 aa	Known RBP	12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	ECSIT	Q9BQ95	431 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	OR2H1	Q9GZK4	316 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	EGLN1	Q9GZT9	426 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	TXNIP	Q9H3M7	391 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	SMURF2	Q9HAU4	748 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732	PPIAL4A	Q9Y536	164 aa		12.83	□□□□□ -0.36
SREBF1-222	ENST00000583732		H7C1C5	153 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	TIMM8A	O60220	97 aa	Predicted RBP	12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	UBOX5	O94941	541 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	PRSS23	O95084	383 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	NGF	P01138	241 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	TSPAN19	P0C672	248 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	NR2C1	P13056	603 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	EGR1	P18146	543 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	LIMS1	P48059	325 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	CTXN1	P60606	82 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	LCN6	P62502	163 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	SF3A3	Q12874	501 aa	Known RBP eCLIP	12.82	□□□□□ -0.36	6e-7	■■■■□ 23.5
SREBF1-222	ENST00000583732	MBNL2	Q5VZF2	373 aa	Known RBP	12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	UNQ6126/PRO20091	Q6UXV3	157 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	CALHM3	Q86XJ0	350 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	ZDHHC22	Q8N966	263 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	STON2	Q8WXE9	905 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	TPD52L3	Q96J77	140 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	ALG12	Q9BV10	488 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	POLR2J2	Q9GZM3	115 aa	Known RBP	12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	POLR2J3	Q9H1A7	115 aa	Known RBP	12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	POFUT1	Q9H488	388 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	OPN4	Q9UHM6	478 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	HIF3A	Q9Y2N7	669 aa		12.82	□□□□□ -0.36
SREBF1-222	ENST00000583732	TRAV27	A0A087WT01	109 aa		12.81	□□□□□ -0.36
SREBF1-222	ENST00000583732	GMNC	A6NCL1	334 aa		12.81	□□□□□ -0.36
SREBF1-222	ENST00000583732	FXYD1	O00168	92 aa		12.81	□□□□□ -0.36
SREBF1-222	ENST00000583732	MRAS	O14807	208 aa		12.81	□□□□□ -0.36
SREBF1-222	ENST00000583732	EDF1	O60869	148 aa	Known RBP	12.81	□□□□□ -0.36
SREBF1-222	ENST00000583732	CST2	P09228	141 aa		12.81	□□□□□ -0.36
SREBF1-222	ENST00000583732	SBK2	P0C263	348 aa		12.81	□□□□□ -0.36
SREBF1-222	ENST00000583732	YAP1	P46937	504 aa	Known RBP	12.81	□□□□□ -0.36
SREBF1-222	ENST00000583732	ARHGDIA	P52565	204 aa		12.81	□□□□□ -0.36
SREBF1-222	ENST00000583732	RPL27	P61353	136 aa	Known RBP	12.81	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms