RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	MAGEE2	Q8TD90	523 aa	Predicted RBP	4.06	□□□□□ -1.76
SS18-223	ENST00000583595	TSEN15	Q8WW01	171 aa	Known RBP	4.06	□□□□□ -1.76
SS18-223	ENST00000583595	SLC7A6	Q92536	515 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF524	Q96C55	264 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	HSFY1	Q96LI6	401 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	PPP1R2P1	Q96PQ5	205 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	FAM173A	Q9BQD7	235 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	TMEM204	Q9BSN7	226 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	DPH7	Q9BTV6	452 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	UCK2	Q9BZX2	261 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	HIPK2	Q9H2X6	1198 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	LIME1	Q9H400	295 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	C6orf106	Q9H6K1	298 aa	Predicted RBP	4.06	□□□□□ -1.76
SS18-223	ENST00000583595	MEPE	Q9NQ76	525 aa	Predicted RBP	4.06	□□□□□ -1.76
SS18-223	ENST00000583595	RGS18	Q9NS28	235 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	SLC17A7	Q9P2U7	560 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	KLHL21	Q9UJP4	597 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	TBC1D24	Q9ULP9	559 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	NDUFAF1	Q9Y375	327 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	FBXO7	Q9Y3I1	522 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	CAMTA1	Q9Y6Y1	1673 aa		4.06	□□□□□ -1.76
SS18-223	ENST00000583595	SNED1	Q8TER0	1413 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	CNTNAP2	Q9UHC6	1331 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	TNS1	Q9HBL0	1735 aa	Known RBP	4.05	□□□□□ -1.76
SS18-223	ENST00000583595	TRAV25	A0A0B4J276	109 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	IGHV3-20	A0A0C4DH32	117 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	PNMA8C	A0A1B0GUJ8	204 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	IQCM	A0A1B0GVH7	501 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595		A0A1W2PPE3	182 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	CCDC182	A6NF36	153 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595		A8MUA0	341 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	C11orf98	E9PRG8	122 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	COPE	O14579	308 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ACOT8	O14734	319 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	NUPL2	O15504	423 aa	Known RBP	4.05	□□□□□ -1.76
SS18-223	ENST00000583595	HUS1	O60921	280 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	UGT2B17	O75795	530 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ATP5L	O75964	103 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	OR2B3	O76000	313 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	CIAO1	O76071	339 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	CLDN1	O95832	211 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	LGI1	O95970	557 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	DHFR	P00374	187 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595		P04436	131 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	IFI30	P13284	250 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	UCHL3	P15374	230 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	HOXB8	P17481	243 aa	Predicted RBP	4.05	□□□□□ -1.76
SS18-223	ENST00000583595	S100P	P25815	95 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	HLA-DMA	P28067	261 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	SPAM1	P38567	509 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	RPL35	P42766	123 aa	Known RBP	4.05	□□□□□ -1.76
SS18-223	ENST00000583595	TSFM	P43897	325 aa	Known RBP	4.05	□□□□□ -1.76
SS18-223	ENST00000583595	PSMD8	P48556	350 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	CSNK1E	P49674	416 aa	Known RBP	4.05	□□□□□ -1.76
SS18-223	ENST00000583595	AKR1D1	P51857	326 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	CRYBA2	P53672	197 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	UGT2B15	P54855	530 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	RAB25	P57735	213 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	PLP1	P60201	277 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ERVK-16	P61578	105 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	TSPAN5	P62079	268 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ST3GAL3	Q11203	375 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	KLRB1	Q12918	225 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ILK	Q13418	452 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ATP6AP1	Q15904	470 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	IL17A	Q16552	155 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	TIGIT	Q495A1	244 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	TEX44	Q53QW1	395 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	CLLU1	Q5K131	121 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	OTUD3	Q5T2D3	398 aa	Predicted RBP	4.05	□□□□□ -1.76
SS18-223	ENST00000583595	FAM219B	Q5XKK7	198 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	C19orf48	Q6RUI8	117 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	PAQR6	Q6TCH4	344 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	GALNT10	Q86SR1	603 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	SNX29P2	Q8IUI4	249 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	BPIFB2	Q8N4F0	458 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	DHRSX	Q8N5I4	330 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF781	Q8N8C0	355 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	SAMD12	Q8N8I0	201 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	C4orf32	Q8N8J7	132 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	BPIFB6	Q8NFQ5	453 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	OR4M1	Q8NGD0	313 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	OR9A1P	Q8NGU1	263 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	DYNC2LI1	Q8TCX1	351 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ASZ1	Q8WWH4	475 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF285	Q96NJ3	590 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF300	Q96RE9	604 aa	Predicted RBP	4.05	□□□□□ -1.76
SS18-223	ENST00000583595	IL4I1	Q96RQ9	567 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ZNF251	Q9BRH9	671 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	C20orf24	Q9BUV8	137 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	CCDC32	Q9BV29	185 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	DUSP16	Q9BY84	665 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ROGDI	Q9GZN7	287 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	SPNS1	Q9H2V7	528 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	RANBP3	Q9H6Z4	567 aa	Predicted RBP	4.05	□□□□□ -1.76
SS18-223	ENST00000583595	CYP3A43	Q9HB55	503 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	ELL3	Q9HB65	397 aa	Predicted RBP	4.05	□□□□□ -1.76
SS18-223	ENST00000583595	B3GAT2	Q9NPZ5	323 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	XPNPEP1	Q9NQW7	623 aa		4.05	□□□□□ -1.76
SS18-223	ENST00000583595	BIN3	Q9NQY0	253 aa		4.05	□□□□□ -1.76

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