RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CCDC73Q6ZRK6 1079 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 SHISA6Q6ZSJ9 500 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 CDR2LQ86X02 465 aaPredicted RBP2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 CDH26Q8IXH8 852 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 NOXO1Q8NFA2 376 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 RHEBL1Q8TAI7 183 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 ABHD3Q8WU67 409 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 PIBF1Q8WXW3 757 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 OR10C1Q96KK4 312 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 RFNGQ9Y644 331 aa2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 TET2Q6N021 2002 aaPredicted RBP2.47□□□□□ -2.01
SMCHD1-204ENST00000581226 SPECC1L-ADORA2AF8WAN1 911 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 UBXN8O00124 270 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 RCBTB2O95199 551 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 SERPIND1P05546 499 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 UQCRFS1P1P0C7P4 283 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 ACTR3P61158 418 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 ACTG2P63267 376 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 LRRC74AQ0VAA2 488 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 SPECC1LQ69YQ0 1117 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 NTM-AS1Q6ZSK4 140 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 RUFY3Q7L099 469 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 ASCL5Q7RTU5 278 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 WDR86Q86TI4 376 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 NBPF5PQ86XG9 351 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 PRSS58Q8IYP2 241 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 EID2Q8N6I1 236 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 OR10R2Q8NGX6 335 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 RGP1Q92546 391 aaPredicted RBP2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 PARP12Q9H0J9 701 aaKnown RBP2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 NEUROG2Q9H2A3 272 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 CWH43Q9H720 699 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 SYNDIG1Q9H7V2 258 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 GPATCH2LQ9NWQ4 482 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 UVRAGQ9P2Y5 699 aa2.46□□□□□ -2.02
SMCHD1-204ENST00000581226 IGLV1-50A0A075B6I6 118 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 ZNF716A6NP11 495 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 SGK1O00141 431 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 AP3B1O00203 1094 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 RAD51BO15315 384 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 CST1P01037 141 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 LINC00869P0C866 280 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 ZNF735P0CB33 412 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 MCF2P10911 925 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 HNRNPH3P31942 346 aaKnown RBP2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 CASP14P31944 242 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 CRYBB2P43320 205 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 CX3CR1P49238 355 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 YWHAGP61981 247 aaKnown RBP eCLIP2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 TWF1Q12792 350 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 RGNQ15493 299 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 PTPN20Q4JDL3 420 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 XKR4Q5GH76 650 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 FAM78AQ5JUQ0 283 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 CEMP1Q6PRD7 247 aaPredicted RBP2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 ARL9Q6T311 187 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 ZNF836Q6ZNA1 936 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 NEGR1Q7Z3B1 354 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 PDIK1LQ8N165 341 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 PLPPR1Q8TBJ4 325 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 RMI2Q96E14 147 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 ZNF681Q96N22 645 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 ZNF382Q96SR6 550 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 KCNJ16Q9NPI9 418 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 ETNK2Q9NVF9 386 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 CTSFQ9UBX1 484 aa2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 CSDC2Q9Y534 153 aaKnown RBP2.45□□□□□ -2.02
SMCHD1-204ENST00000581226 TMEM223A0PJW6 202 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 RP2O75695 350 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 MPZL1O95297 269 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 CRYGBP07316 175 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 SULT1E1P49888 294 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 ZNF138P52744 262 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 PLP1P60201 277 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 BEX3Q00994 111 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 LOXL1Q08397 574 aaPredicted RBP2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 BST2Q10589 180 aaKnown RBP2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 CHRFAM7AQ494W8 412 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 THEM4Q5T1C6 240 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 CCDC183Q5T5S1 534 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 ANKRD26P1Q6NSI1 321 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 PRMT9Q6P2P2 845 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 Q6ZSR3 168 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 LGI3Q8N145 548 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 OR9K2Q8NGE7 335 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 OR1S2Q8NGQ3 325 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 AKR7LQ8NHP1 331 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 ESR2Q92731 530 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 UBE2ZQ9H832 354 aaPredicted RBP2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 FAM49BQ9NUQ9 324 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 DCAF16Q9NXF7 216 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 KLHL28Q9NXS3 571 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 NUP50Q9UKX7 468 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 ING4Q9UNL4 249 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 CNTNAP1P78357 1384 aa2.44□□□□□ -2.02
SMCHD1-204ENST00000581226 ZNF816-ZNF321PA0A0X1KG74 233 aa2.43□□□□□ -2.02
SMCHD1-204ENST00000581226 DPM1O60762 260 aa2.43□□□□□ -2.02
SMCHD1-204ENST00000581226 CLIC3O95833 236 aa2.43□□□□□ -2.02
SMCHD1-204ENST00000581226 OR56A5P0C7T3 313 aa2.43□□□□□ -2.02
SMCHD1-204ENST00000581226 UBTFL6P0CB48 400 aaPredicted RBP2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms