RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 WDR41Q9HAD4 459 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 NUDT15Q9NV35 164 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 STX18Q9P2W9 335 aaKnown RBP4.76□□□□□ -1.65
VPS53-219ENST00000576019 CLN8Q9UBY8 286 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 EXOGQ9Y2C4 368 aaKnown RBP4.76□□□□□ -1.65
VPS53-219ENST00000576019 MMP24Q9Y5R2 645 aa4.76□□□□□ -1.65
VPS53-219ENST00000576019 IGHV2-70DA0A0C4DH43 119 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 TRBV5-4A0A0C4DH59 114 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 IQANK1A0A1B0GTG1 560 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 PRSS37A4D1T9 235 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 CHST1O43916 411 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 C1orf105O95561 183 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 CLPTM1O96005 669 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 WNT2P09544 360 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 GIMD1P0DJR0 217 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 MYL2P10916 166 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 SDC1P18827 310 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 CCNOP22674 350 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 PRDX3P30048 256 aaKnown RBP4.75□□□□□ -1.65
VPS53-219ENST00000576019 XCR1P46094 333 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 CRYBA2P53672 197 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 PKNOX1P55347 436 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 KDSRQ06136 332 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 RAD51Q06609 339 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 DUSP7Q16829 419 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 C9orf139Q6ZV77 190 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 CEACAM19Q7Z692 300 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 NFE4Q86UQ8 179 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 HOGA1Q86XE5 327 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 FNDC5Q8NAU1 212 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 ZNRF1Q8ND25 227 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 ST6GALNAC3Q8NDV1 305 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 OR52E5Q8NH55 327 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 DDI1Q8WTU0 396 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 NUDCD2Q8WVJ2 157 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 PIH1D2Q8WWB5 315 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 TM9SF4Q92544 642 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 PRAC1Q96KF2 57 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 SLC29A1Q99808 456 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 ACBD6Q9BR61 282 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 RAB34Q9BZG1 259 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 LINC00597Q9H2U6 94 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 LY9Q9HBG7 655 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 PARVGQ9HBI0 331 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 NUDT4Q9NZJ9 180 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 STOX2Q9P2F5 926 aaPredicted RBP4.75□□□□□ -1.65
VPS53-219ENST00000576019 GGA2Q9UJY4 613 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 FLVCR2Q9UPI3 526 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 HES2Q9Y543 173 aa4.75□□□□□ -1.65
VPS53-219ENST00000576019 DYSFO75923 2080 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 TRBV7-9A0A0J9YWB2 115 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 TCRBV9S1A1TA0A576 114 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 SAGE2PA6NJ88 616 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 IQCF5A8MTL0 148 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 ZNF99A8MXY4 864 aaPredicted RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 TRDCB7Z8K6 153 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 E9PQ18 207 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 AIM2O14862 343 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 CXCL13O43927 109 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 MAGEC1O60732 1142 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 HUS1O60921 280 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 OXSR1O95747 527 aaPredicted RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 PIGRP01833 764 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 STSP08842 583 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 FGF9P31371 208 aaPredicted RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 IFNA8P32881 189 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 LEPP41159 167 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 ETV5P41161 510 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 LIM2P55344 173 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 ATP5J2P56134 94 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 SSBP2P81877 361 aaPredicted RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 ZIC1Q15915 447 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 AANATQ16613 207 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 KIAA1644Q3SXP7 199 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 FAM120AOSQ5T036 256 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 PVRIGQ6DKI7 326 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 REEP3Q6NUK4 255 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 H3F3CQ6NXT2 135 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 FAM199XQ6PEV8 388 aaPredicted RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 CD300LGQ6UXG3 332 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 ASCL4Q6XD76 172 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 MRPL21Q7Z2W9 205 aaKnown RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 CCDC71Q8IV32 467 aaPredicted RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 DCUN1D3Q8IWE4 304 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 ST13P4Q8IZP2 240 aaPredicted RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 CIARTQ8N365 385 aaPredicted RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 RAB42Q8N4Z0 105 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 TPRX1Q8N7U7 411 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 FBXO36Q8NEA4 188 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 SGMS2Q8NHU3 365 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 RFESDQ8TAC1 157 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 TRUB1Q8WWH5 349 aaKnown RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 NR4A3Q92570 626 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 NEUROG1Q92886 237 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 TOMM40LQ969M1 308 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 RPL36ALQ969Q0 106 aaKnown RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 CNRIP1Q96F85 164 aaPredicted RBP4.74□□□□□ -1.65
VPS53-219ENST00000576019 SLC35A5Q9BS91 424 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 CABLES2Q9BTV7 478 aa4.74□□□□□ -1.65
VPS53-219ENST00000576019 HIPK2Q9H2X6 1198 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms