RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 DNAH7Q8WXX0 4024 aa14.95□□□□□ -0.02
CLK3-227ENST00000570296 LYSTQ99698 3801 aa14.95□□□□□ -0.02
CLK3-227ENST00000570296 C5orf49A4QMS7 147 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 C1QCP02747 245 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 LIPFP07098 398 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 EMX1Q04741 257 aaPredicted RBP14.94□□□□□ -0.02
CLK3-227ENST00000570296 MAD2L1Q13257 205 aaPredicted RBP14.94□□□□□ -0.02
CLK3-227ENST00000570296 ZNF404Q494X3 552 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 PDCD4Q53EL6 469 aaKnown RBP14.94□□□□□ -0.02
CLK3-227ENST00000570296 KLHL22Q53GT1 634 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 SPERTQ8NA61 448 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 OR4F17Q8NGA8 305 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 ABHD4Q8TB40 342 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 SLC35B4Q969S0 331 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 C3orf30Q96M34 536 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 OR4F4Q96R69 305 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 SPATA9Q9BWV2 254 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 GCM1Q9NP62 436 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 FOXJ3Q9UPW0 622 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 CHST2Q9Y4C5 530 aa14.94□□□□□ -0.02
CLK3-227ENST00000570296 ANKRD61A6NGH8 418 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 SERPINI2O75830 405 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 BGLAPP02818 100 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 GDI2P50395 445 aaKnown RBP14.93□□□□□ -0.02
CLK3-227ENST00000570296 SLC7A5Q01650 507 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 PSG7Q13046 419 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 MAPK11Q15759 364 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 CCDC63Q8NA47 563 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 ZNF566Q969W8 418 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 WDFY2Q96P53 400 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 OR2V2Q96R30 315 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 EPYCQ99645 322 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 ASIC5Q9NY37 505 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 CALML5Q9NZT1 146 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 TBK1Q9UHD2 729 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 ZNF232Q9UNY5 417 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 FAM96BQ9Y3D0 163 aa14.93□□□□□ -0.02
CLK3-227ENST00000570296 LOC100509620A0A075B734 347 aa14.92□□□□□ -0.02
CLK3-227ENST00000570296 PLPP3O14495 311 aa14.92□□□□□ -0.02
CLK3-227ENST00000570296 ZNF205O95201 554 aa14.92□□□□□ -0.02
CLK3-227ENST00000570296 CASP8Q14790 479 aa14.92□□□□□ -0.02
CLK3-227ENST00000570296 METTL11BQ5VVY1 283 aa14.92□□□□□ -0.02
CLK3-227ENST00000570296 CD276Q5ZPR3 534 aa14.92□□□□□ -0.02
CLK3-227ENST00000570296 Q6ZR03 302 aa14.92□□□□□ -0.02
CLK3-227ENST00000570296 C17orf53Q8N3J3 647 aaPredicted RBP14.92□□□□□ -0.02
CLK3-227ENST00000570296 KLHDC1Q8N7A1 406 aa14.92□□□□□ -0.02
CLK3-227ENST00000570296 LHX4Q969G2 390 aa14.92□□□□□ -0.02
CLK3-227ENST00000570296 SLC25A44Q96H78 314 aaPredicted RBP14.92□□□□□ -0.02
CLK3-227ENST00000570296 MMP28Q9H239 520 aa14.92□□□□□ -0.02
CLK3-227ENST00000570296 NOP53Q9NZM5 478 aaKnown RBP14.92□□□□□ -0.02
CLK3-227ENST00000570296 ZNRD1Q9P1U0 126 aa14.92□□□□□ -0.02
CLK3-227ENST00000570296 WI2-2373I1.2A0A1W2PRP0 233 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 CHRNGP07510 517 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 FBP1P09467 338 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 ARHGDIAP52565 204 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 HOXC5Q00444 222 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 EMX2Q04743 252 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 COX10Q12887 443 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 NSUN5P1Q3KNT7 163 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 PGBD2Q6P3X8 592 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 ZNF841Q6ZN19 808 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 C10orf107Q8IVU9 208 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 LRRC18Q8N456 261 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 TRIML2Q8N7C3 387 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 MZB1Q8WU39 189 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 DNAJA4Q8WW22 397 aaPredicted RBP14.91□□□□□ -0.02
CLK3-227ENST00000570296 TUBGCP3Q96CW5 907 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 R3HDM4Q96D70 268 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 KCNN2Q9H2S1 579 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 CACYBPQ9HB71 228 aaKnown RBP14.91□□□□□ -0.02
CLK3-227ENST00000570296 P2RX2Q9UBL9 471 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 SIGLEC9Q9Y336 463 aa14.91□□□□□ -0.02
CLK3-227ENST00000570296 CAB39Q9Y376 341 aaPredicted RBP14.91□□□□□ -0.02
CLK3-227ENST00000570296 QDPRP09417 244 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 CASQ1P31415 396 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 KIR2DS4P43632 304 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 NPY4RP50391 375 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 ZNF84P51523 738 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 CRISP3P54108 245 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 DCDC5Q6ZRR9 648 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 SLC35D2Q76EJ3 337 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 LSMEM1Q8N8F7 131 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 WFDC9Q8NEX5 89 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 OR5R1Q8NH85 324 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 TESCQ96BS2 214 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 CCDC115Q96NT0 180 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 MOGAT1Q96PD6 335 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 SIRPDQ9H106 197 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 CENPHQ9H3R5 247 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 ELOVL3Q9HB03 270 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 CCNB1IP1Q9NPC3 277 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 IFT52Q9Y366 437 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 U3KQK5 164 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 HYDINQ4G0P3 5121 aa14.9□□□□□ -0.02
CLK3-227ENST00000570296 A0A1B0GWA3 101 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 TRIM13O60858 407 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 CYB5R3P00387 301 aaPredicted RBP14.89□□□□□ -0.03
CLK3-227ENST00000570296 F13BP05160 661 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 ABHD2P08910 425 aa14.89□□□□□ -0.03
CLK3-227ENST00000570296 PGA4P0DJD7 388 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms