RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TRAF3IP2O43734 574 aaPredicted RBP7.1□□□□□ -1.27
VPS39-213ENST00000570062 CYTIPO60759 359 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 GPX5O75715 221 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 APOL3O95236 402 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 PGA4P0DJD7 388 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 PGA3P0DJD8 388 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 FCGR2AP12318 317 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 CPN1P15169 458 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 IL11P20809 199 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 NAA10P41227 235 aaPredicted RBP7.1□□□□□ -1.27
VPS39-213ENST00000570062 CSNK1A1P48729 337 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 MEOX1P50221 254 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 CCL11P51671 97 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 RIDAP52758 137 aaKnown RBP7.1□□□□□ -1.27
VPS39-213ENST00000570062 UCNP55089 124 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 NCS1P62166 190 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 LSM3P62310 102 aaKnown RBP7.1□□□□□ -1.27
VPS39-213ENST00000570062 ZNF45Q02386 682 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 DCTN2Q13561 401 aaKnown RBP7.1□□□□□ -1.27
VPS39-213ENST00000570062 CDK5R1Q15078 307 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 WIPI1Q5MNZ9 446 aaPredicted RBP7.1□□□□□ -1.27
VPS39-213ENST00000570062 C10orf128Q5T292 105 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 ZNF684Q5T5D7 378 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 RIPPLY2Q5TAB7 128 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 MZT2AQ6P582 158 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 GALNTL5Q7Z4T8 443 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 KRT77Q7Z794 578 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 YRDCQ86U90 279 aaKnown RBP7.1□□□□□ -1.27
VPS39-213ENST00000570062 CCDC54Q8NEL0 328 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 SLC26A10Q8NG04 563 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 OR9K2Q8NGE7 335 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 OR51L1Q8NGJ5 315 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 OR5M1Q8NGP8 315 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 OR6N1Q8NGY5 312 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 ABHD4Q8TB40 342 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 THEM6Q8WUY1 208 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 BORCS5Q969J3 196 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 ABTB1Q969K4 478 aaPredicted RBP7.1□□□□□ -1.27
VPS39-213ENST00000570062 TMEM45BQ96B21 275 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 OR8B4Q96RC9 309 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 TBX5Q99593 518 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 MDFIQ99750 246 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 NXF2Q9GZY0 626 aaKnown RBP7.1□□□□□ -1.27
VPS39-213ENST00000570062 C1orf198Q9H425 327 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 RERGLQ9H628 205 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 TMEM185BQ9H7F4 350 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 SP140LQ9H930 580 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 DEPPQ9NTK1 212 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 GLTPQ9NZD2 209 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 RABL2AQ9UBK7 228 aaPredicted RBP7.1□□□□□ -1.27
VPS39-213ENST00000570062 ADAM30Q9UKF2 790 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 RABL2BQ9UNT1 228 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 ZNF281Q9Y2X9 895 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 MSRB2Q9Y3D2 182 aa7.1□□□□□ -1.27
VPS39-213ENST00000570062 IGKV3D-15A0A087WSY6 115 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 TRGV5A0A0B4J1U4 118 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 TRAV1-2A0A0B4J238 106 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 IQCMA0A1B0GVH7 501 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ANKRD61A6NGH8 418 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 A6NL46 340 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ZNF724A8MTY0 619 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ADARB2-AS1A8MUL3 147 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 TNFSF11O14788 317 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 CASKO14936 926 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 KLK10O43240 276 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 SELENOFO60613 162 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 TFP02787 698 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ADRA2AP08913 450 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 SPARCP09486 303 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 PRKAR1AP10644 381 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 HLA-DOBP13765 273 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 CTLA4P16410 223 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ZNF12P17014 697 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ZNF708P17019 499 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 PAX7P23759 505 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 EDNRAP25101 427 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 PEX19P40855 299 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 EIF1AXP47813 144 aaKnown RBP7.09□□□□□ -1.27
VPS39-213ENST00000570062 CLDN17P56750 224 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 OR12D2P58182 307 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 AQP6Q13520 282 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ALKBH1Q13686 389 aaKnown RBP7.09□□□□□ -1.27
VPS39-213ENST00000570062 MELKQ14680 651 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 DEFB109BQ30KR1 87 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 LIPNQ5VXI9 398 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 VASNQ6EMK4 673 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ABLIM2Q6H8Q1 611 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 RPUSD3Q6P087 351 aaKnown RBP7.09□□□□□ -1.27
VPS39-213ENST00000570062 SLC25A47Q6Q0C1 308 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ARL9Q6T311 187 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 KLHL24Q6TFL4 600 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 B3GLCTQ6Y288 498 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 DPY19L4Q7Z388 723 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 ABHD12BQ7Z5M8 362 aaPredicted RBP7.09□□□□□ -1.27
VPS39-213ENST00000570062 DPPA2Q7Z7J5 298 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 GGNQ86UU5 652 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 VASH2Q86V25 355 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 KDM8Q8N371 416 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 TMEM251Q8N6I4 163 aa7.09□□□□□ -1.27
VPS39-213ENST00000570062 YIPF7Q8N8F6 280 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms