RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 A0A0B4J2A0 478 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 LOC100289279A0A1B0GTE1 492 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 OR2M5A3KFT3 312 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 F8W036 122 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 ZNF264O43296 627 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 UPK3AO75631 287 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 MPZL1O95297 269 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 TNFP01375 233 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 BLOC1S1P78537 153 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 SLC18B1Q6NT16 456 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 UNQ9370/PRO34162Q6UXP9 181 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 CCDC36Q8IYA8 594 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 ZNF248Q8NDW4 579 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 OR5M9Q8NGP3 310 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 DCBLD2Q96PD2 775 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 DMRTA2Q96SC8 542 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 NXF5Q9H1B4 397 aaKnown RBP13.11□□□□□ -0.31
VPS35-210ENST00000568784 SHPKQ9UHJ6 478 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 PLRG1O43660 514 aaKnown RBP13.11□□□□□ -0.31
VPS35-210ENST00000568784 PI3P19957 117 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 MESTQ5EB52 335 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 FAM109BQ6ICB4 259 aaPredicted RBP13.11□□□□□ -0.31
VPS35-210ENST00000568784 ZNF321PQ8N8H1 164 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 BPIFCQ8NFQ6 507 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 OR1S1Q8NH92 325 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 SLC41A2Q96JW4 573 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 BMFQ96LC9 184 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 KLHDC3Q9BQ90 382 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 PLEKHA1Q9HB21 404 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 MMP25Q9NPA2 562 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 GPN3Q9UHW5 284 aaPredicted RBP13.11□□□□□ -0.31
VPS35-210ENST00000568784 GPR31O00270 319 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 AGTR1P30556 359 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 ANKRD16Q6P6B7 361 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 ZFP82Q8N141 532 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 GTPBP8Q8N3Z3 284 aaPredicted RBP13.11□□□□□ -0.31
VPS35-210ENST00000568784 GVQW1Q8N7I0 195 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 OR6N1Q8NGY5 312 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 DCUN1D4Q92564 292 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 TSPAN32Q96QS1 320 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 MRI1Q9BV20 369 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 UBQLN4Q9NRR5 601 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 KLF15Q9UIH9 416 aa13.11□□□□□ -0.31
VPS35-210ENST00000568784 LINC00271P0C7V0 271 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 PVALBP20472 110 aaPredicted RBP13.1□□□□□ -0.31
VPS35-210ENST00000568784 ATP1B3P54709 279 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 TOMM34Q15785 309 aaPredicted RBP13.1□□□□□ -0.31
VPS35-210ENST00000568784 NKAIN2Q5VXU1 208 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 KCTD18Q6PI47 426 aaPredicted RBP13.1□□□□□ -0.31
VPS35-210ENST00000568784 OR1J4Q8NGS1 313 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 C2CD4CQ8TF44 421 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 TAAR8Q969N4 342 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 SLC25A28Q96A46 364 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 TMEM41AQ96HV5 264 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 GPER1Q99527 375 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 REG4Q9BYZ8 158 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 SEC61A2Q9H9S3 476 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 TMEM272A0A1B0GTI8 110 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 B3GALNT1O75752 331 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 F12P00748 615 aaPredicted RBP13.1□□□□□ -0.31
VPS35-210ENST00000568784 PNMTP11086 282 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 S100A10P60903 97 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 DHRS2Q13268 280 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 CCDC157Q569K6 752 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 TM4SF19Q96DZ7 209 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 C4orf45Q96LM5 186 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 VSTM2LQ96N03 204 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 P2RY10O00398 339 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 UTS2O95399 124 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 CT45A8P0DMV1 189 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 CT45A9P0DMV2 189 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 ZP2Q05996 745 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 AIMP2Q13155 320 aaKnown RBP13.1□□□□□ -0.31
VPS35-210ENST00000568784 CT45A2Q5DJT8 189 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 NKX6-2Q9C056 277 aaPredicted RBP13.1□□□□□ -0.31
VPS35-210ENST00000568784 EPHA6Q9UF33 1036 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 ICAM5Q9UMF0 924 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 METTL21EPA6NDL7 271 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 ZNF432O94892 652 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 OR2A4O95047 310 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 LDOC1O95751 146 aaPredicted RBP13.1□□□□□ -0.31
VPS35-210ENST00000568784 ALOX5APP20292 161 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 FHL1Q13642 323 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 SLC9A3R2Q15599 337 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 ACKR1Q16570 336 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 GPR119Q8TDV5 335 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 OR2A7Q96R45 310 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 SLC7A5P2Q9GIP4 190 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 PRR13Q9NZ81 148 aa13.1□□□□□ -0.31
VPS35-210ENST00000568784 TCRBV21S2A2A0A5A6 115 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 TGFBR3LH3BV60 316 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 SMIM10L1P0DMW3 83 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 GP1BBP13224 206 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 EPHA4P54764 986 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 COX15Q7KZN9 410 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 TRAPPC6BQ86SZ2 158 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 LRRTM1Q86UE6 522 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 PRSS35Q8N3Z0 413 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 OR10H5Q8NGA6 315 aa13.09□□□□□ -0.31
VPS35-210ENST00000568784 TOE1Q96GM8 510 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms