RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 FAM3DQ96BQ1 224 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 HSFY1Q96LI6 401 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 CNN2Q99439 309 aaKnown RBP1.2□□□□□ -2.22
VPS35-207ENST00000568191 GORASP2Q9H8Y8 452 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 ENOPH1Q9UHY7 261 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 SH3BGRL2Q9UJC5 107 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 CLEC4AQ9UMR7 237 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 TSSC4Q9Y5U2 329 aaPredicted RBP1.2□□□□□ -2.22
VPS35-207ENST00000568191 SEC16AO15027 2179 aa1.2□□□□□ -2.22
VPS35-207ENST00000568191 SNTNA6NMZ2 147 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 DNASE2O00115 360 aaPredicted RBP1.19□□□□□ -2.22
VPS35-207ENST00000568191 PPP1R2P9O14990 202 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 GCM2O75603 506 aaPredicted RBP1.19□□□□□ -2.22
VPS35-207ENST00000568191 AIFM1O95831 613 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 FGF1P05230 155 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 TPM2P07951 284 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 CALM1P0DP23 149 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 CALM2P0DP24 149 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 CALM3P0DP25 149 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 ATP1B2P14415 290 aaPredicted RBP1.19□□□□□ -2.22
VPS35-207ENST00000568191 DESP17661 470 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 IL1RNP18510 177 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 SERPINB5P36952 375 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 CEACAM6P40199 344 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 SEC61GP60059 68 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 OGDHQ02218 1023 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 PRKCDQ05655 676 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 MRPL28Q13084 256 aaKnown RBP1.19□□□□□ -2.22
VPS35-207ENST00000568191 BAMBIQ13145 260 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 RCAN2Q14206 197 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 ARHGAP19Q14CB8 494 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 ZNF77Q15935 545 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 PTPN20Q4JDL3 420 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 SMUG1Q53HV7 270 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 UNQ9165/PRO28630Q6UXU0 137 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 Q6ZPB1 254 aaPredicted RBP1.19□□□□□ -2.22
VPS35-207ENST00000568191 CEP112Q8N8E3 955 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 OR4S2Q8NH73 311 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 LILRB4Q8NHJ6 448 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 LKAAEAR1Q8TD35 194 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 N4BP2L2Q92802 583 aaPredicted RBP1.19□□□□□ -2.22
VPS35-207ENST00000568191 CREB3L1Q96BA8 519 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 TCEANC2Q96MN5 208 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 ZNF681Q96N22 645 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 RPRD1AQ96P16 312 aaPredicted RBP1.19□□□□□ -2.22
VPS35-207ENST00000568191 TSGA13Q96PP4 275 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 TIMM29Q9BSF4 260 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 SLC25A2Q9BXI2 301 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 ANKRD19PQ9H560 264 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 CWH43Q9H720 699 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 SLC7A8Q9UHI5 535 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 BLOC1S6Q9UL45 172 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 ST3GAL6Q9Y274 331 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 PIGLQ9Y2B2 252 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 SIGLEC9Q9Y336 463 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 ATP6V0A2Q9Y487 856 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 CNTNAP1P78357 1384 aa1.19□□□□□ -2.22
VPS35-207ENST00000568191 ATAD2BQ9ULI0 1458 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 SYNRGQ9UMZ2 1314 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 TRAV39A0A0B4J263 110 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 C5orf63A6NC05 138 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 HAS3O00219 553 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 MTX2O75431 263 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 EIF3GO75821 320 aaKnown RBP eCLIP1.18□□□□□ -2.22
VPS35-207ENST00000568191 SCGNO76038 276 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 CLDN9O95484 217 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 RAB3DO95716 219 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 IL1BP01584 269 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 HLA-DQA1P01909 254 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 FGGP02679 453 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 APCSP02743 223 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 COL8A2P25067 703 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 CD1CP29017 333 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 HNRNPH3P31942 346 aaKnown RBP1.18□□□□□ -2.22
VPS35-207ENST00000568191 HSD17B2P37059 387 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 PRMT2P55345 433 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 ACTG2P63267 376 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 ZNF616Q08AN1 781 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 IL15RAQ13261 267 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 PMF1Q6P1K2 205 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 ZFP1Q6P2D0 407 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 ARL9Q6T311 187 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 SPINT4Q6UDR6 99 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 FBXW12Q6X9E4 464 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 HDDC2Q7Z4H3 204 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 NOXO1Q8NFA2 376 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 STEAP2Q8NFT2 490 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 OR13G1Q8NGZ3 307 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 OR1P1Q8NH06 330 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 OR8U1Q8NH10 309 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 LINC01560Q8TB33 94 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 RLN3Q8WXF3 142 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 DNAJC1Q96KC8 554 aaKnown RBP1.18□□□□□ -2.22
VPS35-207ENST00000568191 P2RX4Q99571 388 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 KCTD14Q9BQ13 255 aaPredicted RBP1.18□□□□□ -2.22
VPS35-207ENST00000568191 SAV1Q9H4B6 383 aaPredicted RBP1.18□□□□□ -2.22
VPS35-207ENST00000568191 UBE2ZQ9H832 354 aaPredicted RBP1.18□□□□□ -2.22
VPS35-207ENST00000568191 KCNJ16Q9NPI9 418 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 RABL2BQ9UNT1 228 aa1.18□□□□□ -2.22
VPS35-207ENST00000568191 RRP15Q9Y3B9 282 aaKnown RBP1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms