RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SLC16A14Q7RTX9 510 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 CCDC36Q8IYA8 594 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 PIAS4Q8N2W9 510 aaPredicted RBP16.98■□□□□ 0.31
CLN3-225ENST00000566824 SVOPLQ8N434 492 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 OR9Q1Q8NGQ5 310 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 AKAP1Q92667 903 aaKnown RBP eCLIP16.98■□□□□ 0.31
CLN3-225ENST00000566824 SNX18Q96RF0 628 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 ZNF416Q9BWM5 594 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 UBTD1Q9HAC8 227 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 MOKQ9UQ07 419 aa16.98■□□□□ 0.31
CLN3-225ENST00000566824 RENP00797 406 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 GAAP10253 952 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 PYCR1P32322 319 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 GRK5P34947 590 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 MEP1BQ16820 701 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 NRN1LQ496H8 165 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 C1QTNF12Q5T7M4 302 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 FAM169BQ8N8A8 192 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 CIB1Q99828 191 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 RBM4Q9BWF3 364 aaKnown RBP16.97■□□□□ 0.31
CLN3-225ENST00000566824 HCAR1Q9BXC0 346 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 MED20Q9H944 212 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 KRT84Q9NSB2 600 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 CCDC168Q8NDH2 2452 aa16.97■□□□□ 0.31
CLN3-225ENST00000566824 E7EQL1 145 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 UBL3O95164 117 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 FARS2O95363 451 aaKnown RBP16.96■□□□□ 0.31
CLN3-225ENST00000566824 CLUP10909 449 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 ZNF32P17041 273 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 NPR2P20594 1047 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 MSR1P21757 451 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 ARR3P36575 388 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 POLR2IP36954 125 aaKnown RBP16.96■□□□□ 0.31
CLN3-225ENST00000566824 CRISP1P54107 249 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 PPP2R2BQ00005 443 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 NAAAQ02083 359 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 ZNF672Q499Z4 452 aaPredicted RBP16.96■□□□□ 0.31
CLN3-225ENST00000566824 SLC22A25Q6T423 547 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 LYPD4Q6UWN0 246 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.96■□□□□ 0.31
CLN3-225ENST00000566824 ZBTB46Q86UZ6 589 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 GLB1L2Q8IW92 636 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 OR51L1Q8NGJ5 315 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 C11orf40Q8WZ69 217 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 OSBPL10Q9BXB5 764 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 NMNAT2Q9BZQ4 307 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 RNF121Q9H920 327 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 CMC2Q9NRP2 79 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 BAIAP2Q9UQB8 552 aa16.96■□□□□ 0.31
CLN3-225ENST00000566824 FAM183AA6NL82 134 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 TFP02787 698 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 GYPBP06028 91 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 CST2P09228 141 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 CENPAP49450 140 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 HGFACQ04756 655 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 C3orf36Q3SXR2 165 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 SLC27A4Q6P1M0 643 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 PQLC1Q8N2U9 271 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 PARP8Q8N3A8 854 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 CPEB3Q8NE35 698 aaKnown RBP16.96■□□□□ 0.3
CLN3-225ENST00000566824 AKR7LQ8NHP1 331 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 NANOS1Q8WY41 292 aaKnown RBP16.96■□□□□ 0.3
CLN3-225ENST00000566824 RADILQ96JH8 1075 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 WNT5BQ9H1J7 359 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 SLC25A19Q9HC21 320 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 KLHL21Q9UJP4 597 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 PLEKHA6Q9Y2H5 1048 aa16.96■□□□□ 0.3
CLN3-225ENST00000566824 IGHV2OR16-5A0A0B4J2B6 119 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 M0R129 80 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 HS3ST1O14792 307 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 RAB36O95755 333 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 BAG2O95816 211 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 PSKH1P11801 424 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 CCL2P13500 99 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 IGFBP5P24593 272 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 CRABP1P29762 137 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 CDH11P55287 796 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 PSG4Q00888 419 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 PTGES3Q15185 160 aaKnown RBP16.95■□□□□ 0.3
CLN3-225ENST00000566824 SLC36A2Q495M3 483 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 PABPC1L2AQ5JQF8 200 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 C10orf67Q8IYJ2 551 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 PAQR4Q8N4S7 273 aaPredicted RBP16.95■□□□□ 0.3
CLN3-225ENST00000566824 DNAJC9Q8WXX5 260 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 SLC29A1Q99808 456 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 RACGAP1Q9H0H5 632 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 MRPL22Q9NWU5 206 aaKnown RBP16.95■□□□□ 0.3
CLN3-225ENST00000566824 FKBP7Q9Y680 259 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 ATP23Q9Y6H3 246 aa16.95■□□□□ 0.3
CLN3-225ENST00000566824 MYO9AB2RTY4 2548 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 EI24O14681 340 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 SURF4O15260 269 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 SERPINA5P05154 406 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 APEX1P27695 318 aaKnown RBP16.94■□□□□ 0.3
CLN3-225ENST00000566824 KCNMB1Q16558 191 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 ZNF774Q6NX45 483 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 TMEM53Q6P2H8 277 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 PAMR1Q6UXH9 720 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 CDH24Q86UP0 819 aa16.94■□□□□ 0.3
CLN3-225ENST00000566824 CBR4Q8N4T8 237 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms