RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 THRBP10828 461 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 MVDP53602 400 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 PCBP3P57721 371 aaKnown RBP6.12□□□□□ -1.43
VPS4A-203ENST00000564399 BPIFB3P59826 476 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 FGF12P61328 243 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 PAX2Q02962 417 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 CDK5R2Q13319 367 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 TAF11Q15544 211 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 FAM91A1Q658Y4 838 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 SLC27A4Q6P1M0 643 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 RFPL4BQ6ZWI9 263 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 KLBQ86Z14 1044 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 NUDCD3Q8IVD9 361 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 ZNF781Q8N8C0 355 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 AKR7LQ8NHP1 331 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 BBS10Q8TAM1 723 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 TCP10LQ8TDR4 215 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 ITLN1Q8WWA0 313 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 POM121L2Q96KW2 1035 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 RHOXF2Q9BQY4 288 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 PCGF1Q9BSM1 259 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 TXLNGYQ9BZA5 131 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 NUF2Q9BZD4 464 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 TPT1P8Q9HAU6 139 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 A4GALTQ9NPC4 353 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 MKS1Q9NXB0 559 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 TENM3Q9P273 2699 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 MIOXQ9UGB7 285 aa6.12□□□□□ -1.43
VPS4A-203ENST00000564399 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.12□□□□□ -1.43
VPS4A-203ENST00000564399 LOC100509620A0A075B734 347 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 MCIDASD6RGH6 385 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 H0YL77 283 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 TMEM178BH3BS89 294 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 ITM2AO43736 263 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 MT-ATP6P00846 226 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 IGHV4-59P01825 116 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 HIST1H2ABP04908 130 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 BPGMP07738 259 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 PGA4P0DJD7 388 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 PGA3P0DJD8 388 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 ZNF32P17041 273 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 CPT2P23786 658 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 IL12AP29459 219 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 PRKAR1BP31321 381 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 PITPNBP48739 271 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 RPL14P50914 215 aaKnown RBP6.11□□□□□ -1.43
VPS4A-203ENST00000564399 ARHGDIAP52565 204 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 RGS8P57771 180 aaPredicted RBP6.11□□□□□ -1.43
VPS4A-203ENST00000564399 BST1Q10588 318 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 PSG7Q13046 419 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 OR1Q1Q15612 314 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 SGCAQ16586 387 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 NRN1LQ496H8 165 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 GTDC1Q4AE62 458 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 RUNDC3AQ59EK9 446 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 KPRPQ5T749 579 aaPredicted RBP6.11□□□□□ -1.43
VPS4A-203ENST00000564399 SAMD5Q5TGI4 173 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 ZNF774Q6NX45 483 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 Q6ZSV7 163 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 HIST3H2AQ7L7L0 130 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 VASH1Q7L8A9 365 aaPredicted RBP6.11□□□□□ -1.43
VPS4A-203ENST00000564399 NLRC3Q7RTR2 1065 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 ALDH16A1Q8IZ83 802 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 OR8B3Q8NGG8 313 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 GATAD2BQ8WXI9 593 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 SGCDQ92629 289 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 ANP32BQ92688 251 aaKnown RBP6.11□□□□□ -1.43
VPS4A-203ENST00000564399 HIST1H2ACQ93077 130 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 MAL2Q969L2 176 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 MCHR2Q969V1 340 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 NEIL1Q96FI4 390 aaPredicted RBP6.11□□□□□ -1.43
VPS4A-203ENST00000564399 OR8B2Q96RD0 313 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 SIGLEC11Q96RL6 698 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 ZNF347Q96SE7 839 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 TMEM43Q9BTV4 400 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 SIAEQ9HAT2 523 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 ELOVL3Q9HB03 270 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 TMEM165Q9HC07 324 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 BCL2L10Q9HD36 194 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 CLN8Q9UBY8 286 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 IL19Q9UHD0 177 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 SLC13A4Q9UKG4 626 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 RYR3Q15413 4870 aa6.11□□□□□ -1.43
VPS4A-203ENST00000564399 A0A0B4J2E0 115 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 A0A1B0GX12 115 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 WDR91A4D1P6 747 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 H3BSA7 217 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 IFNL4K9M1U5 179 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 TNFRSF13BO14836 293 aaPredicted RBP6.1□□□□□ -1.43
VPS4A-203ENST00000564399 MGRN1O60291 552 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 TPST1O60507 370 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 CH25HO95992 272 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 CYB5R3P00387 301 aaPredicted RBP6.1□□□□□ -1.43
VPS4A-203ENST00000564399 OPN1MWP04001 364 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 IL6P05231 212 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 ALDOCP09972 364 aaKnown RBP6.1□□□□□ -1.43
VPS4A-203ENST00000564399 OPN1MW2P0DN77 364 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 OPN1MW3P0DN78 364 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 UMPSP11172 480 aa6.1□□□□□ -1.43
VPS4A-203ENST00000564399 ETS2P15036 469 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms