RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 LIN54Q6MZP7 749 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 HSD17B13Q7Z5P4 300 aaPredicted RBP11.92□□□□□ -0.5
CLN3-210ENST00000563874 MCATQ8IVS2 390 aaKnown RBP11.92□□□□□ -0.5
CLN3-210ENST00000563874 C12orf45Q8N5I9 185 aaPredicted RBP11.92□□□□□ -0.5
CLN3-210ENST00000563874 STEAP2Q8NFT2 490 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 OR6K3Q8NGY3 331 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 ST8SIA2Q92186 375 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 FAM131CQ96AQ9 280 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 ZNF75AQ96N20 296 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 TWSG1Q9GZX9 223 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 CDC14CA4D256 554 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 SRPX2O60687 465 aaPredicted RBP11.92□□□□□ -0.5
CLN3-210ENST00000563874 RPA2P15927 270 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 RASGEF1BQ0VAM2 473 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 TOMM34Q15785 309 aaPredicted RBP11.92□□□□□ -0.5
CLN3-210ENST00000563874 GLYATL3Q5SZD4 288 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 EEF1A1P5Q5VTE0 462 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 TAF8Q7Z7C8 310 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 PXT1Q8NFP0 134 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 NKD1Q969G9 470 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 SEH1LQ96EE3 360 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 RFPL4AA6NLU0 287 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 RFPL4AL1F8VTS6 287 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 SLC17A2O00624 439 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 PBX2P40425 430 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 LUMP51884 338 aaPredicted RBP11.92□□□□□ -0.5
CLN3-210ENST00000563874 BPIFB3P59826 476 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 MFGE8Q08431 387 aaPredicted RBP11.92□□□□□ -0.5
CLN3-210ENST00000563874 ARMC6Q6NXE6 501 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 CHRDL2Q6WN34 429 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 TMEM184AQ6ZMB5 413 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 OR4S1Q8NGB4 309 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 OR51A2Q8NGJ7 313 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 OTOSQ8NHW6 89 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 GPX8Q8TED1 209 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 MMABQ96EY8 250 aaPredicted RBP11.92□□□□□ -0.5
CLN3-210ENST00000563874 MRGPRX1Q96LB2 322 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 ADOQ96SZ5 270 aa11.92□□□□□ -0.5
CLN3-210ENST00000563874 MRPS33Q9Y291 106 aaKnown RBP11.92□□□□□ -0.5
CLN3-210ENST00000563874 TMEM184BQ9Y519 407 aaPredicted RBP11.92□□□□□ -0.5
CLN3-210ENST00000563874 FITM1A5D6W6 292 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 FAM74A7A6NL05 159 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 SCDO00767 359 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 CLDN4O14493 209 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 ZNF432O94892 652 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 ITGB2P05107 769 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 APEHP13798 732 aaKnown RBP11.91□□□□□ -0.5
CLN3-210ENST00000563874 EGR3Q06889 387 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 TAF13Q15543 124 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 FAM74A3Q4VXF1 159 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 SLC22A18ASQ8N1D0 253 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 ZNF615Q8N8J6 731 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 PDCD10Q9BUL8 212 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 NRSN2Q9GZP1 204 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 NXF5Q9H1B4 397 aaKnown RBP11.91□□□□□ -0.5
CLN3-210ENST00000563874 UBQLN4Q9NRR5 601 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 TAS2R4Q9NYW5 299 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 TAS2R3Q9NYW6 316 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 B9D1Q9UPM9 204 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 ZNF264O43296 627 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 KCNAB3O43448 404 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 AQP8O94778 261 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 NUDT14O95848 222 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 HOXC4P09017 264 aaPredicted RBP11.91□□□□□ -0.5
CLN3-210ENST00000563874 MAOBP27338 520 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 UBE2IP63279 158 aaKnown RBP11.91□□□□□ -0.5
CLN3-210ENST00000563874 HHEXQ03014 270 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 MOGAT2Q3SYC2 334 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 CD163Q86VB7 1156 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 ARHGEF39Q8N4T4 335 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 FAM160A2Q8N612 972 aaPredicted RBP11.91□□□□□ -0.5
CLN3-210ENST00000563874 ZSCAN1Q8NBB4 408 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 LRRC46Q96FV0 321 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 GABRG3Q99928 467 aa11.91□□□□□ -0.5
CLN3-210ENST00000563874 MRPS18BQ9Y676 258 aaKnown RBP11.91□□□□□ -0.5
CLN3-210ENST00000563874 OR5H14A6NHG9 310 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 XKRYO14609 159 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 SLC16A7O60669 478 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 SNAPC5O75971 98 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 STARP49675 285 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 SPOCK1Q08629 439 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 SLC17A1Q14916 467 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 ATPAF1Q5TC12 328 aaPredicted RBP11.9□□□□□ -0.5
CLN3-210ENST00000563874 TMEM225Q6GV28 225 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 GAL3ST4Q96RP7 486 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 CMKLR1Q99788 373 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 IFT46Q9NQC8 304 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 PNO1Q9NRX1 252 aaKnown RBP11.9□□□□□ -0.5
CLN3-210ENST00000563874 DHDHQ9UQ10 334 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 NOP16Q9Y3C1 178 aaKnown RBP11.9□□□□□ -0.5
CLN3-210ENST00000563874 TMEM14AQ9Y6G1 99 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 TMEM235A6NFC5 223 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 C17orf105B2RV13 164 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 B4DGG1 531 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 HCRTR2O43614 444 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 OR6A2O95222 327 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 UTS2O95399 124 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 TXNDC12O95881 172 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 IFI6P09912 130 aa11.9□□□□□ -0.5
CLN3-210ENST00000563874 TNFRSF4P43489 277 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms