RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 KRCC1Q9NPI7 259 aaPredicted RBP13.47□□□□□ -0.25
VPS39-203ENST00000561797 MYEF2Q9P2K5 600 aaKnown RBP13.47□□□□□ -0.25
VPS39-203ENST00000561797 REV1Q9UBZ9 1251 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 IL20RAQ9UHF4 553 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 ADAM21Q9UKJ8 722 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 SIGLEC7Q9Y286 467 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 ZFHX3Q15911 3703 aa13.47□□□□□ -0.25
VPS39-203ENST00000561797 TEX13CA0A0J9YWL9 993 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 SLC22A23A1A5C7 686 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 UNC119BA6NIH7 251 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 VWC2LB2RUY7 222 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 M0R233 179 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 NDUFS8O00217 210 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 FABP3P05413 133 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 STOMP27105 288 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 ALDH3B1P43353 468 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 LIMS1P48059 325 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 EVX1P49640 407 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 MNAT1P51948 309 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 SMIM11AP58511 58 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 ERVS71-1P61550 626 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 TMEM249Q2WGJ8 235 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 ALKBH6Q3KRA9 238 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 MESTQ5EB52 335 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 FAM27BQ5VT28 67 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 CYP2R1Q6VVX0 501 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 THSD4Q6ZMP0 1018 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 FUZQ9BT04 418 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 RERGLQ9H628 205 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 MALRD1Q5VYJ5 2156 aa13.46□□□□□ -0.25
VPS39-203ENST00000561797 A0A1W2PPW3 197 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 LYNX1G3V0Z9 82 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 SOCS2O14508 198 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 TLX2O43763 284 aaPredicted RBP13.45□□□□□ -0.26
VPS39-203ENST00000561797 STAMBPO95630 424 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 FAM107AO95990 144 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 CLPTM1O96005 669 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 SCG5P05408 212 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 CST2P09228 141 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 LYNX1P0DP58 116 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 RAD52P43351 418 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 NR4A2P43354 598 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 UCP2P55851 309 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 PSG4Q00888 419 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 KRR1Q13601 381 aaKnown RBP13.45□□□□□ -0.26
VPS39-203ENST00000561797 FOXL2NBQ6ZUU3 175 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 FAM122BQ7Z309 247 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 ZDHHC21Q8IVQ6 265 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 CCDC197Q8NCU1 140 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 UBASH3BQ8TF42 649 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 GPA33Q99795 319 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 OR2H1Q9GZK4 316 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 MS4A5Q9H3V2 200 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 EMC7Q9NPA0 242 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 IER3IP1Q9Y5U9 82 aa13.45□□□□□ -0.26
VPS39-203ENST00000561797 LOC100509620A0A075B734 347 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 PRSS37A4D1T9 235 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 C5orf49A4QMS7 147 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 IMPA2O14732 288 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 SNAP29O95721 258 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 MSR1P21757 451 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 SDHAP31040 664 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 RRM2P31350 389 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 GDI2P50395 445 aaKnown RBP13.44□□□□□ -0.26
VPS39-203ENST00000561797 FXYD6P3P58550 94 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 SELENOVP59797 346 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 ENDOGQ14249 297 aaKnown RBP13.44□□□□□ -0.26
VPS39-203ENST00000561797 SPATS1Q496A3 300 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 SMARCD3Q6STE5 483 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 UGT2A3Q6UWM9 527 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 RINLQ6ZS11 566 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 ZER1Q7Z7L7 766 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 OR1J1Q8NGS3 322 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 SYNPRQ8TBG9 265 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 C11orf40Q8WZ69 217 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 POM121L2Q96KW2 1035 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 ZNF416Q9BWM5 594 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 BCL2L14Q9BZR8 327 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 BPESC1Q9GZL8 116 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 WNT5BQ9H1J7 359 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 IL1RAPQ9NPH3 570 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 NRIP3Q9NQ35 241 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 POLE4Q9NR33 117 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 TAAR3PQ9P1P4 343 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 TIMM10BQ9Y5J6 103 aa13.44□□□□□ -0.26
VPS39-203ENST00000561797 ABCA2Q9BZC7 2435 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 A8MV72 311 aaPredicted RBP13.43□□□□□ -0.26
VPS39-203ENST00000561797 OR10H3O60404 316 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 SLC16A7O60669 478 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 CRLF1O75462 422 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 NAT2P11245 290 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 CTLA4P16410 223 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 ATP6V1B2P21281 511 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 RPS6KA3P51812 740 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 KLF3P57682 345 aaPredicted RBP13.43□□□□□ -0.26
VPS39-203ENST00000561797 PCBD1P61457 104 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 NKPD1Q17RQ9 610 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 OTPQ5XKR4 325 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 CYB5R2Q6BCY4 276 aa13.43□□□□□ -0.26
VPS39-203ENST00000561797 GPR139Q6DWJ6 353 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms