RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 PTP4A3O75365 173 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 ZNF254O75437 659 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 REM1O75628 298 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 SNAPC5O75971 98 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 KRT33AO76009 404 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 OR7A10O76100 309 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 AQP8O94778 261 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 RGS11O94810 467 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 OR2A4O95047 310 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 NKX2-2O95096 273 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 NDUFB6O95139 128 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 NDUFB2O95178 105 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 PPP1R3DO95685 299 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 CXCL14O95715 111 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 LDOC1O95751 146 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 ECDO95905 644 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 CFDP00746 253 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 PLAUP00749 431 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 IFNGP01579 166 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 STATHP02808 62 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 MT-ND4P03905 459 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 UMODP07911 640 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 MELTFP08582 738 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 NMBP08949 121 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 MRPL3P09001 348 aaKnown RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 HOXC4P09017 264 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 CLTBP09497 229 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 CD3GP09693 182 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 RAB40ALP0C0E4 278 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 ACSM4P0C7M7 580 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 SLC35G6P0C7Q6 338 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 OR2T7P0C7T2 308 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 CALCBP10092 127 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 CLUP10909 449 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 PRG2P13727 222 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 CPMP14384 443 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 EPCAMP16422 314 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 CTRB1P17538 263 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 FUT1P19526 365 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 PSMB1P20618 241 aaKnown RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 C4BPBP20851 252 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 PTNP21246 168 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 ZNF10P21506 573 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 DRD5P21918 477 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 FCARP24071 287 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 ITGB8P26012 769 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 GIFP27352 417 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 MAPK3P27361 379 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 DPP4P27487 766 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 CALCRP30988 508 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 SLC6A6P31641 620 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 PYCR1P32322 319 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 ACAA2P42765 397 aaKnown RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 SRP9P49458 86 aaKnown RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 CCR6P51684 374 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 ART1P52961 327 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 SLC25A1P53007 311 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 CLDN2P57739 230 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 OR12D2P58182 307 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 VSX2P58304 361 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 TSPAN5P62079 268 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 POU3F1Q03052 451 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 SSBP1Q04837 148 aaKnown RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 SLC3A1Q07837 685 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 CRYZQ08257 329 aaKnown RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 FOXD4Q12950 439 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 RUNX2Q13950 521 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 FGFBP1Q14512 234 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 KRT33BQ14525 404 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 KIR2DS3Q14952 304 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 PDGFRLQ15198 375 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 TOMM20Q15388 145 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 MPPED2Q15777 294 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 CST6Q15828 149 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 GRK1Q15835 563 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 ZNF141Q15928 474 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 ZSWIM7Q19AV6 140 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 PRICKLE4Q2TBC4 344 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 ACSM3Q53FZ2 586 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 TMEM255AQ5JRV8 349 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 NHLRC3Q5JS37 347 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 WDR45BQ5MNZ6 344 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 LINC01590Q5TEZ4 76 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 ZNF776Q68DI1 518 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 CTRB2Q6GPI1 263 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 PWWP2BQ6NUJ5 590 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 RPL22L1Q6P5R6 122 aaKnown RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 FAM198BQ6UWH4 519 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 GLDNQ6ZMI3 551 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 ASB18Q6ZVZ8 466 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 RNF44Q7L0R7 432 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 LINGO2Q7L985 606 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 KRT74Q7RTS7 529 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 PRSS42Q7Z5A4 293 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 HSD17B13Q7Z5P4 300 aaPredicted RBP2.21□□□□□ -2.06
SPG11-223ENST00000560858 CEACAM19Q7Z692 300 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 PPP1R3BQ86XI6 285 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 NAXDQ8IW45 347 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 SLC35F2Q8IXU6 374 aa2.21□□□□□ -2.06
SPG11-223ENST00000560858 OR4N4Q8N0Y3 316 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms