RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	ITGA2	P17301	1181 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	MSR1	P21757	451 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	SRP14	P37108	136 aa	Known RBP	12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	DVL1P1	P54792	670 aa	Predicted RBP	12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	CDH15	P55291	814 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	SMIM11A	P58511	58 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	CTXN1	P60606	82 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	SLC3A1	Q07837	685 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	KRT72	Q14CN4	511 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	PABPC1L2A	Q5JQF8	200 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	WDFY1	Q8IWB7	410 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	ZCCHC24	Q8N2G6	241 aa	Known RBP	12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	ARIH2OS	Q8N7S6	290 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	NPEPL1	Q8NDH3	523 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	ICA1L	Q8NDH6	482 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	DIRC2	Q96SL1	478 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	EGLN1	Q9GZT9	426 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	CMTM6	Q9NX76	183 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	TAAR3P	Q9P1P4	343 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	GRIP1	Q9Y3R0	1128 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	STAB1	Q9NY15	2570 aa		12.08	□□□□□ -0.48
TPM1-223	ENST00000560445	C5orf49	A4QMS7	147 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	LILRA1	O75019	489 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	SLC2A10	O95528	541 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	SERPINA1	P01009	418 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	CCNO	P22674	350 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	PRDX6	P30041	224 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	GSK3B	P49841	420 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	RUNX1T1	Q06455	604 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	SCRN3	Q0VDG4	424 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	LAPTM4A	Q15012	233 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	MAD2L1BP	Q15013	274 aa	Predicted RBP	12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	CR1L	Q2VPA4	569 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	GPR139	Q6DWJ6	353 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	TMPRSS11F	Q6ZWK6	438 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	OR1J1	Q8NGS3	322 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	OR51A7	Q8NH64	312 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	FGFBP3	Q8TAT2	258 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	NSMAF	Q92636	917 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	HDAC2	Q92769	488 aa	Known RBP	12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	NMD3	Q96D46	503 aa	Known RBP	12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	RAB39B	Q96DA2	213 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	ELMOD3	Q96FG2	381 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	C1orf159	Q96HA4	380 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	HSH2D	Q96JZ2	352 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	REPIN1	Q9BWE0	567 aa	Known RBP	12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	FAM107B	Q9H098	131 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	TMEFF2	Q9UIK5	374 aa	Predicted RBP	12.07	□□□□□ -0.48
TPM1-223	ENST00000560445	ENPP4	Q9Y6X5	453 aa		12.07	□□□□□ -0.48
TPM1-223	ENST00000560445		A0A1W2PPL8	197 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445		A0A1W2PRQ8	180 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	LRP5L	A4QPB2	252 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	NME4	O00746	187 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	PPIH	O43447	177 aa	Known RBP	12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	PIP5K1C	O60331	668 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	ICMT	O60725	284 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	IGHV3-13	P01766	116 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	H1F0	P07305	194 aa	Known RBP	12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	CD14	P08571	375 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	COX5B	P10606	129 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	NAT2	P11245	290 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	ZNF32	P17041	273 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	GSTM3	P21266	225 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	DGCR6	Q14129	220 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	HFE	Q30201	348 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	ZBED5	Q49AG3	693 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	ELFN2	Q5R3F8	820 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	PGM2L1	Q6PCE3	622 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	SHQ1	Q6PI26	577 aa	Known RBP	12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	DNM1P34	Q6PK57	102 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	SLC25A47	Q6Q0C1	308 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	FOXL2NB	Q6ZUU3	175 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	VTCN1	Q7Z7D3	282 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	ADCK1	Q86TW2	530 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	RFLNB	Q8N5W9	214 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	OR51F2	Q8NH61	342 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	IPCEF1	Q8WWN9	437 aa	Predicted RBP	12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	NABP1	Q96AH0	204 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	ZNF570	Q96NI8	536 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	OR2H1	Q9GZK4	316 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	SAP30L	Q9HAJ7	183 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	NDE1	Q9NXR1	346 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	ABCD2	Q9UBJ2	740 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	FZR1	Q9UM11	496 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	UGT2A1	Q9Y4X1	527 aa		12.06	□□□□□ -0.48
TPM1-223	ENST00000560445	TRAV27	A0A087WT01	109 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	TRAV20	A0A0B4J274	112 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	IGHV1-69-2	A0A0G2JMI3	117 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	CLDN25	C9JDP6	229 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	NDUFB2	O95178	105 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	HPX	P02790	462 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	CCL2	P13500	99 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	RHCE	P18577	417 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	TCN1	P20061	433 aa	Predicted RBP	12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	TNFSF4	P23510	183 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	CDA	P32320	146 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	CRYBB2	P43320	205 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	YAP1	P46937	504 aa	Known RBP	12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	ZNF81	P51508	661 aa		12.05	□□□□□ -0.48
TPM1-223	ENST00000560445	SEC24C	P53992	1094 aa		12.05	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms