RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 KRT77Q7Z794 578 aa11.59□□□□□ -0.55
LDLR-207ENST00000558013 SPICQ8N5J4 248 aa11.59□□□□□ -0.55
LDLR-207ENST00000558013 SMRP1Q8NCR6 262 aa11.59□□□□□ -0.55
LDLR-207ENST00000558013 COQ8AQ8NI60 647 aa11.59□□□□□ -0.55
LDLR-207ENST00000558013 ASB5Q8WWX0 329 aa11.59□□□□□ -0.55
LDLR-207ENST00000558013 WBP1Q96G27 269 aa11.59□□□□□ -0.55
LDLR-207ENST00000558013 ARL5BQ96KC2 179 aa11.59□□□□□ -0.55
LDLR-207ENST00000558013 DHRS9Q9BPW9 319 aa11.59□□□□□ -0.55
LDLR-207ENST00000558013 OPN4Q9UHM6 478 aa11.59□□□□□ -0.55
LDLR-207ENST00000558013 ZNF230Q9UIE0 474 aaPredicted RBP11.59□□□□□ -0.55
LDLR-207ENST00000558013 EMC9Q9Y3B6 208 aa11.59□□□□□ -0.55
LDLR-207ENST00000558013 SPEF1Q9Y4P9 236 aa11.59□□□□□ -0.55
LDLR-207ENST00000558013 TRAV36DV7A0A075B6V5 113 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 TMED7-TICAM2A0A0A6YYA0 188 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 IGLV1-36A0A0B4J1U3 117 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 TLCD2A6NGC4 264 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 OPN1LWP04000 364 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 CPN1P15169 458 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 RPL27P61353 136 aaKnown RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 EIF2B1Q14232 305 aaKnown RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 EMC4Q5J8M3 183 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 WDR45BQ5MNZ6 344 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 TMEM225Q6GV28 225 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 LRFN4Q6PJG9 635 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 C3P1Q6ZMU1 363 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 RTN4RL2Q86UN3 420 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 ZNF679Q8IYX0 411 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 EID2Q8N6I1 236 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 NKD1Q969G9 470 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 C8orf44Q96CB5 159 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 TINAGL1Q9GZM7 467 aaPredicted RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 CTSFQ9UBX1 484 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 CDV3Q9UKY7 258 aaKnown RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 TMED7Q9Y3B3 224 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 LRP12Q9Y561 859 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 LOC100509620A0A075B734 347 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 IGHV1OR15-9A0A0B4J2B8 117 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 SOX1O00570 391 aaPredicted RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 EIF1AYO14602 144 aaKnown RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 ALOX12BO75342 701 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 GIPP09681 153 aaPredicted RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 NME1P15531 152 aaKnown RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 RAB14P61106 215 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 RASGEF1BQ0VAM2 473 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 RBMS2Q15434 407 aaKnown RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 RAB11BQ15907 218 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 NHLRC3Q5JS37 347 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 TMED4Q7Z7H5 227 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 GALNT16Q8N428 558 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 ZNF519Q8TB69 540 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 FBXO4Q9UKT5 387 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 LOC105371267A0A1B0GV96 52 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 SLC22A23A1A5C7 686 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 FITM1A5D6W6 292 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 LGALS8O00214 317 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 TSPAN2O60636 221 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 ACSM4P0C7M7 580 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 MRPS10P82664 201 aaKnown RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 HLXQ14774 488 aaPredicted RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 MFSD13AQ14CX5 517 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 C4orf46Q504U0 113 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 COL13A1Q5TAT6 717 aaPredicted RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 PXDC1Q5TGL8 231 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 HLA-DQA1Q5Y7H0 255 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 MAMDC2Q7Z304 686 aaPredicted RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 OR4S1Q8NGB4 309 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 WWTR1Q9GZV5 400 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 GPN1Q9HCN4 374 aaPredicted RBP11.58□□□□□ -0.56
LDLR-207ENST00000558013 DIABLOQ9NR28 239 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 HRH3Q9Y5N1 445 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 TMEM14AQ9Y6G1 99 aa11.58□□□□□ -0.56
LDLR-207ENST00000558013 ARID1AO14497 2285 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 GP1BBP13224 206 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 CD38P28907 300 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 PRSS3P35030 304 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 CSNK1EP49674 416 aaKnown RBP11.57□□□□□ -0.56
LDLR-207ENST00000558013 C1orf140Q5VVS0 124 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 CLEC1AQ8NC01 280 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 ADAMTS18Q8TE60 1221 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 RNF128Q8TEB7 428 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 TNFAIP8L1Q8WVP5 186 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 SLC25A28Q96A46 364 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 CMBLQ96DG6 245 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 ARL6Q9H0F7 186 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 MED29Q9NX70 200 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 EMC3Q9P0I2 261 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 DHDHQ9UQ10 334 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 FARSAQ9Y285 508 aaKnown RBP11.57□□□□□ -0.56
LDLR-207ENST00000558013 SLC17A2O00624 439 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 LDOC1O95751 146 aaPredicted RBP11.57□□□□□ -0.56
LDLR-207ENST00000558013 IGLV3-19P01714 112 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 ZNF28P17035 718 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 EIF1AXP47813 144 aaKnown RBP11.57□□□□□ -0.56
LDLR-207ENST00000558013 RAP2BP61225 183 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 SEC61A1P61619 476 aaKnown RBP11.57□□□□□ -0.56
LDLR-207ENST00000558013 SGCBQ16585 318 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 SLC22A6Q4U2R8 563 aa11.57□□□□□ -0.56
LDLR-207ENST00000558013 DMRTC1Q5HYR2 192 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms