RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 C12orf71A8MTZ7 269 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 XKRYO14609 159 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 CDC42EP2O14613 210 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 LMX1BO60663 402 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 PTP4A3O75365 173 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 NDUFB2O95178 105 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 IGHV3-13P01766 116 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 MT-ND5P03915 603 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 COX5BP10606 129 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 NCK1P16333 377 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 ZNF32P17041 273 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 MSR1P21757 451 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 ACHEP22303 614 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 APEX1P27695 318 aaKnown RBP10.15□□□□□ -0.78
VRK1-204ENST00000555351 CDAP32320 146 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 GPR4P46093 362 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 LIMS1P48059 325 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 MNAT1P51948 309 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 TMEM33P57088 247 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 FMODQ06828 376 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 TOP3AQ13472 1001 aaPredicted RBP10.15□□□□□ -0.78
VRK1-204ENST00000555351 KRT72Q14CN4 511 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 CARTPTQ16568 116 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 SGCAQ16586 387 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 IQCCQ4KMZ1 466 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 TBPL2Q6SJ96 375 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 FAM122BQ7Z309 247 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 ADCK1Q86TW2 530 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 ZCCHC24Q8N2G6 241 aaKnown RBP10.15□□□□□ -0.78
VRK1-204ENST00000555351 PAQR4Q8N4S7 273 aaPredicted RBP10.15□□□□□ -0.78
VRK1-204ENST00000555351 CPEB3Q8NE35 698 aaKnown RBP10.15□□□□□ -0.78
VRK1-204ENST00000555351 RDH5Q92781 318 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 PYURFQ96I23 114 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 SYT3Q9BQG1 590 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 FUZQ9BT04 418 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 FAM107BQ9H098 131 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 NRIP3Q9NQ35 241 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 EIF3KQ9UBQ5 218 aaKnown RBP10.15□□□□□ -0.78
VRK1-204ENST00000555351 CGGBP1Q9UFW8 167 aaPredicted RBP10.15□□□□□ -0.78
VRK1-204ENST00000555351 CD300AQ9UGN4 299 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 EGFL7Q9UHF1 273 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 TAGLN3Q9UI15 199 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 DUSP13Q9UII6 198 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 SIGLEC7Q9Y286 467 aa10.15□□□□□ -0.78
VRK1-204ENST00000555351 JMJD1CQ15652 2540 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 A0A1W2PPW3 197 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 PRSS37A4D1T9 235 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 C17orf100A8MU93 164 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 KIAA1324LA8MWY0 1029 aaPredicted RBP10.14□□□□□ -0.79
VRK1-204ENST00000555351 LILRA1O75019 489 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 TXNDC12O95881 172 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 SEMG1P04279 462 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 LAP3P28838 519 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 SDHAP31040 664 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 RPL4P36578 427 aaKnown RBP10.14□□□□□ -0.79
VRK1-204ENST00000555351 LIPAP38571 399 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 OMPP47874 163 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 GDI2P50395 445 aaKnown RBP10.14□□□□□ -0.79
VRK1-204ENST00000555351 PSG4Q00888 419 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 ZNF718Q3SXZ3 478 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 ELFN2Q5R3F8 820 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 ARL9Q6T311 187 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 IGFN1Q86VF2 1251 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 LRP11Q86VZ4 500 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 SNX33Q8WV41 574 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 NSMAFQ92636 917 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 POP5Q969H6 163 aaKnown RBP10.14□□□□□ -0.79
VRK1-204ENST00000555351 MSI2Q96DH6 328 aaKnown RBP10.14□□□□□ -0.79
VRK1-204ENST00000555351 ZNF570Q96NI8 536 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 ZNF416Q9BWM5 594 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 BEX2Q9BXY8 128 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 OR2H1Q9GZK4 316 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 HINT3Q9NQE9 182 aaKnown RBP10.14□□□□□ -0.79
VRK1-204ENST00000555351 POLE4Q9NR33 117 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 MYEF2Q9P2K5 600 aaKnown RBP10.14□□□□□ -0.79
VRK1-204ENST00000555351 NDRG4Q9ULP0 352 aaKnown RBP10.14□□□□□ -0.79
VRK1-204ENST00000555351 KCNS2Q9ULS6 477 aa10.14□□□□□ -0.79
VRK1-204ENST00000555351 LOC100509620A0A075B734 347 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 TEX13CA0A0J9YWL9 993 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 LOC100289279A0A1B0GTE1 492 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 IMPA2O14732 288 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 LCKP06239 509 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 ADH4P08319 380 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 FAM157BP0CG42 384 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 CCL2P13500 99 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 ZNF16P17020 682 aaPredicted RBP10.13□□□□□ -0.79
VRK1-204ENST00000555351 ZNF26P17031 533 aaPredicted RBP10.13□□□□□ -0.79
VRK1-204ENST00000555351 HNF1AP20823 631 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 ALDH3B1P43353 468 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 LSM6P62312 80 aaKnown RBP10.13□□□□□ -0.79
VRK1-204ENST00000555351 ERVK-25P63136 954 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 GNGT1P63211 74 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 TEKQ02763 1124 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 SCRN3Q0VDG4 424 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 ENDOGQ14249 297 aaKnown RBP10.13□□□□□ -0.79
VRK1-204ENST00000555351 NKPD1Q17RQ9 610 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 MESTQ5EB52 335 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 FGD3Q5JSP0 725 aa10.13□□□□□ -0.79
VRK1-204ENST00000555351 MBNL2Q5VZF2 373 aaKnown RBP10.13□□□□□ -0.79
VRK1-204ENST00000555351 TMEM154Q6P9G4 183 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms