RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 TMEM72A0PK05 275 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 KPNA4O00629 521 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-214ENST00000554604 GPR171O14626 319 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 ZNF208O43345 1280 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 EIF1BO60739 113 aaKnown RBP10.96□□□□□ -0.65
SHMT2-214ENST00000554604 CH25HO95992 272 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 HSMCR30P0CW71 290 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 SAGP10523 405 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-214ENST00000554604 PNMTP11086 282 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 SLC6A6P31641 620 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 ETV1P50549 477 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 WNT4P56705 351 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 SLC35A1P78382 337 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 SSX1Q16384 188 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 ACKR1Q16570 336 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 ABLIM2Q6H8Q1 611 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 WBP2NLQ6ICG8 309 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 C20orf204Q6ZNR8 217 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 CXXC5Q7LFL8 322 aaKnown RBP10.96□□□□□ -0.65
SHMT2-214ENST00000554604 BHLHA15Q7RTS1 189 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-214ENST00000554604 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.96□□□□□ -0.65
SHMT2-214ENST00000554604 ADCK1Q86TW2 530 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 UBE2J2Q8N2K1 259 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 OR9Q1Q8NGQ5 310 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 S100ZQ8WXG8 99 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 HSD17B8Q92506 261 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 SGTBQ96EQ0 304 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 PLPPR2Q96GM1 343 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 CCL19Q99731 98 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 USB1Q9BQ65 265 aaKnown RBP10.96□□□□□ -0.65
SHMT2-214ENST00000554604 NAA11Q9BSU3 229 aaPredicted RBP10.96□□□□□ -0.65
SHMT2-214ENST00000554604 TMEM43Q9BTV4 400 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 C12orf10Q9HB07 376 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 HINT3Q9NQE9 182 aaKnown RBP10.96□□□□□ -0.65
SHMT2-214ENST00000554604 CMC2Q9NRP2 79 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 SEC14L4Q9UDX3 406 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 CLEC2DQ9UHP7 191 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 PRSS50Q9UI38 385 aa10.96□□□□□ -0.65
SHMT2-214ENST00000554604 NOSIPQ9Y314 301 aaKnown RBP10.96□□□□□ -0.65
SHMT2-214ENST00000554604 NIPBLQ6KC79 2804 aaeCLIP10.95□□□□□ -0.66
SHMT2-214ENST00000554604 IGKV3D-15A0A087WSY6 115 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 ZNF814B7Z6K7 855 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 SMPD2O60906 423 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 LYZL6O75951 148 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 CNOT4O95628 575 aaKnown RBP10.95□□□□□ -0.66
SHMT2-214ENST00000554604 IGHA1P01876 353 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 CPEP16870 476 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 FUT1P19526 365 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 PTNP21246 168 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 BMXP51813 675 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 ADAM8P78325 824 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 FHL1Q13642 323 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 ZNF846Q147U1 533 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 STK11Q15831 433 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 NIPAL3Q6P499 406 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 ZNF704Q6ZNC4 412 aaPredicted RBP10.95□□□□□ -0.66
SHMT2-214ENST00000554604 OAFQ86UD1 273 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 CPOQ8IVL8 374 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 APH1AQ96BI3 265 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 C3orf49Q96BT1 292 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 IFT27Q9BW83 186 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 SLIRPQ9GZT3 109 aaKnown RBP10.95□□□□□ -0.66
SHMT2-214ENST00000554604 ADAM19Q9H013 955 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 OR51E2Q9H255 320 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 SIAEQ9HAT2 523 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 NDUFB11Q9NX14 153 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 CCDC59Q9P031 241 aaKnown RBP10.95□□□□□ -0.66
SHMT2-214ENST00000554604 PMF1-BGLAPU3KQ54 211 aa10.95□□□□□ -0.66
SHMT2-214ENST00000554604 TRAV27A0A087WT01 109 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 ZC3H12DA2A288 527 aaKnown RBP10.94□□□□□ -0.66
SHMT2-214ENST00000554604 METTL15A6NJ78 407 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 ZNF716A6NP11 495 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 CLDN25C9JDP6 229 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 ARHGEF9O43307 516 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 MRPL33O75394 65 aaKnown RBP10.94□□□□□ -0.66
SHMT2-214ENST00000554604 NDUFB2O95178 105 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 SLC2A10O95528 541 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 IFNGP01579 166 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 IGHV3-9P01782 118 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 LIMS3P0CW19 117 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 LIMS4P0CW20 117 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 LOXP28300 417 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-214ENST00000554604 IDUAP35475 653 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 SLC16A1P53985 500 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 NKX6-1P78426 367 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-214ENST00000554604 ACSM1Q08AH1 577 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 DOC2BQ14184 412 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 TAB1Q15750 504 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 THSD4Q6ZMP0 1018 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 MEPCEQ7L2J0 689 aaKnown RBP10.94□□□□□ -0.66
SHMT2-214ENST00000554604 ATG4DQ86TL0 474 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-214ENST00000554604 OR6Q1Q8NGQ2 317 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 LIPHQ8WWY8 451 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 MUCL1Q96DR8 90 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 TNFRSF13CQ96RJ3 184 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 CHCHD6Q9BRQ6 235 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 TMUB1Q9BVT8 246 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 POTEKPQ9BYX7 375 aa10.94□□□□□ -0.66
SHMT2-214ENST00000554604 WDR12Q9GZL7 423 aaKnown RBP10.94□□□□□ -0.66
SHMT2-214ENST00000554604 NXF2Q9GZY0 626 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms