RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 HDAC2Q92769 488 aaKnown RBP10.9□□□□□ -0.66
LINC00643-202ENST00000553426 TIMD4Q96H15 378 aa10.9□□□□□ -0.66
LINC00643-202ENST00000553426 NDEL1Q9GZM8 345 aa10.9□□□□□ -0.66
LINC00643-202ENST00000553426 OCEL1Q9H607 264 aa10.9□□□□□ -0.66
LINC00643-202ENST00000553426 SAP30LQ9HAJ7 183 aa10.9□□□□□ -0.66
LINC00643-202ENST00000553426 TREM2Q9NZC2 230 aa10.9□□□□□ -0.66
LINC00643-202ENST00000553426 TIMM10BQ9Y5J6 103 aa10.9□□□□□ -0.66
LINC00643-202ENST00000553426 TRAV20A0A0B4J274 112 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 IGHV1-69-2A0A0G2JMI3 117 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 PIP5K1CO60331 668 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 SASH3O75995 380 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 ZNF682O95780 498 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 CST2P09228 141 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 GAAP10253 952 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 LIPAP38571 399 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 CRYBB2P43320 205 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 SLC9A3P48764 834 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 ZNF81P51508 661 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 CTXN1P60606 82 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 ERVK-25P63136 954 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 FMODQ06828 376 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 TRAM2Q15035 370 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 HSP90B2PQ58FF3 399 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 SLC25A47Q6Q0C1 308 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 OAFQ86UD1 273 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 NRMQ8IXM6 262 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 RNF113BQ8IZP6 322 aaKnown RBP10.89□□□□□ -0.67
LINC00643-202ENST00000553426 RP9Q8TA86 221 aaKnown RBP10.89□□□□□ -0.67
LINC00643-202ENST00000553426 GEMIN6Q8WXD5 167 aaKnown RBP10.89□□□□□ -0.67
LINC00643-202ENST00000553426 RAB1CQ92928 201 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 RAB39BQ96DA2 213 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 ELMOD3Q96FG2 381 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 TSPAN32Q96QS1 320 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 EGLN1Q9GZT9 426 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 RACGAP1Q9H0H5 632 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 ELOVL3Q9HB03 270 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 LPAR2Q9HBW0 351 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 CYSLTR2Q9NS75 346 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 A4GNTQ9UNA3 340 aa10.89□□□□□ -0.67
LINC00643-202ENST00000553426 A0A1W2PPL8 197 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 EFCAB9A8MZ26 197 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 CLDN25C9JDP6 229 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 NDUFAB1O14561 156 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 XKRYO14609 159 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 RP2O75695 350 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 IGHMP01871 453 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 LAP3P28838 519 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 RPL4P36578 427 aaKnown RBP10.88□□□□□ -0.67
LINC00643-202ENST00000553426 YAP1P46937 504 aaKnown RBP10.88□□□□□ -0.67
LINC00643-202ENST00000553426 ARHGDIAP52565 204 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 PSG4Q00888 419 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 SRSF2Q01130 221 aaKnown RBP10.88□□□□□ -0.67
LINC00643-202ENST00000553426 MVKQ03426 396 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 GLO1Q04760 184 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 PRKCDQ05655 676 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 SLC3A1Q07837 685 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 TSTQ16762 297 aaKnown RBP10.88□□□□□ -0.67
LINC00643-202ENST00000553426 ZMAT1Q5H9K5 638 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 ACSM5Q6NUN0 579 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 FAHD2BQ6P2I3 314 aaPredicted RBP10.88□□□□□ -0.67
LINC00643-202ENST00000553426 ZNF730Q6ZMV8 503 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 USP51Q70EK9 711 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 FKBP9P1Q75LS8 142 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 CYP4Z1Q86W10 505 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 OFCC1Q8IZS5 231 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 OR51A7Q8NH64 312 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 AKR7LQ8NHP1 331 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 ABHD4Q8TB40 342 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 NABP1Q96AH0 204 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 RCN3Q96D15 328 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 NMD3Q96D46 503 aaKnown RBP10.88□□□□□ -0.67
LINC00643-202ENST00000553426 FAHD2AQ96GK7 314 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 POM121L2Q96KW2 1035 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 LRRC37BQ96QE4 947 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 HOPXQ9BPY8 73 aaPredicted RBP10.88□□□□□ -0.67
LINC00643-202ENST00000553426 OR2H1Q9GZK4 316 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 METTL17Q9H7H0 456 aaPredicted RBP10.88□□□□□ -0.67
LINC00643-202ENST00000553426 GRHPRQ9UBQ7 328 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 CGGBP1Q9UFW8 167 aaPredicted RBP10.88□□□□□ -0.67
LINC00643-202ENST00000553426 NDRG4Q9ULP0 352 aaKnown RBP10.88□□□□□ -0.67
LINC00643-202ENST00000553426 UGT2A1Q9Y4X1 527 aa10.88□□□□□ -0.67
LINC00643-202ENST00000553426 TRAV27A0A087WT01 109 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 A0A0A6YYJ9 748 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 C12orf71A8MTZ7 269 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 FAM157AC9JC47 383 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 H3BSA7 217 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 CXCR6O00574 342 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 CCDC22O60826 627 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 PNPP00491 289 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 MSR1P21757 451 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 PPP1CBP62140 327 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 LIPEQ05469 1076 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 IFI44LQ53G44 452 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 SPATA46Q5T0L3 261 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 AVPI1Q5T686 147 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 MBNL2Q5VZF2 373 aaKnown RBP10.87□□□□□ -0.67
LINC00643-202ENST00000553426 VTCN1Q7Z7D3 282 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 ZER1Q7Z7L7 766 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 SYT9Q86SS6 491 aa10.87□□□□□ -0.67
LINC00643-202ENST00000553426 PEG10Q86TG7 708 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms