RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 OR1N2Q8NGR9 330 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 NDRG1Q92597 394 aaKnown RBP4.36□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF599Q96NL3 588 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 TSSK3Q96PN8 268 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 NAPGQ99747 312 aaPredicted RBP4.36□□□□□ -1.71
SCFD1-208ENST00000553278 SLC25A22Q9H936 323 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 SH2D2AQ9NP31 389 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 MARCH5Q9NX47 278 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 CD300AQ9UGN4 299 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 NOSIPQ9Y314 301 aaKnown RBP4.36□□□□□ -1.71
SCFD1-208ENST00000553278 SLC25A15Q9Y619 301 aa4.36□□□□□ -1.71
SCFD1-208ENST00000553278 COL22A1Q8NFW1 1626 aaPredicted RBP4.35□□□□□ -1.71
SCFD1-208ENST00000553278 GMDSO60547 372 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 DPM1O60762 260 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 ICOSLGO75144 302 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 MPDU1O75352 247 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 ARG1P05089 322 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 FOLR2P14207 255 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 HPGDP15428 266 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 COX7A1P24310 79 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 CLDN6P56747 220 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 MAP3K7CLP57077 242 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF45Q02386 682 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 OR7A5Q15622 319 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 C18orf21Q32NC0 220 aaPredicted RBP4.35□□□□□ -1.71
SCFD1-208ENST00000553278 PTPN20Q4JDL3 420 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 RNLSQ5VYX0 342 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 COPS6Q7L5N1 327 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 SPATA24Q86W54 205 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 VKORC1L1Q8N0U8 176 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 OR51F2Q8NH61 342 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 FANK1Q8TC84 345 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 CACNG8Q8WXS5 425 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 P2RX4Q99571 388 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 FOXC2Q99958 501 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 PAXXQ9BUH6 204 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 NAA50Q9GZZ1 169 aaKnown RBP4.35□□□□□ -1.71
SCFD1-208ENST00000553278 SRMSQ9H3Y6 488 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 NXF3Q9H4D5 531 aaKnown RBP4.35□□□□□ -1.71
SCFD1-208ENST00000553278 KCNJ16Q9NPI9 418 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 CTSFQ9UBX1 484 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 PRSS21Q9Y6M0 314 aa4.35□□□□□ -1.71
SCFD1-208ENST00000553278 PCNX3Q9H6A9 2034 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 A0A087WWV3 80 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 IGKV1D-13A0A0B4J2D9 117 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 A0A0G2JLM5 398 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 NUPL2O15504 423 aaKnown RBP4.34□□□□□ -1.71
SCFD1-208ENST00000553278 RAD51CO43502 376 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 PI15O43692 258 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF354AO60765 605 aaPredicted RBP4.34□□□□□ -1.71
SCFD1-208ENST00000553278 ENTPD5O75356 428 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 AIFM1O95831 613 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 IGHV3-23P01764 117 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 HPNP05981 417 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 GKN3PP0CG01 181 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 IGKV1-13P0DP09 117 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 IVDP26440 423 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 GPX4P36969 197 aaPredicted RBP4.34□□□□□ -1.71
SCFD1-208ENST00000553278 ATP5J2P56134 94 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 CCNJQ5T5M9 372 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 TPTE2P1Q5T6R2 138 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 TMPRSS11AQ6ZMR5 421 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF497Q6ZNH5 498 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF621Q6ZSS3 439 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 LINC00336Q6ZUF6 198 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 NDUFAF7Q7L592 441 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF677Q86XU0 584 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 KIF2BQ8N4N8 673 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 ACER1Q8TDN7 264 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 ARPC1AQ92747 370 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 CCDC124Q96CT7 223 aaKnown RBP4.34□□□□□ -1.71
SCFD1-208ENST00000553278 FCRL1Q96LA6 429 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 NICN1Q9BSH3 213 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 CHID1Q9BWS9 393 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 CALN1Q9BXU9 219 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 MAP1LC3CQ9BXW4 147 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 ARMC7Q9H6L4 198 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF702PQ9H963 129 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 VCX3AQ9NNX9 186 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 ZNF229Q9UJW7 825 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 VSIG4Q9Y279 399 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 LRRK1Q38SD2 2015 aa4.34□□□□□ -1.71
SCFD1-208ENST00000553278 MAPK8IP3Q9UPT6 1336 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 TRAV39A0A0B4J263 110 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 GOLGA8QA0A0J9YX86 632 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 IQCF5A8MTL0 148 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 H3BN98 237 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 AQP8O94778 261 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 VAPBO95292 243 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 SMC2O95347 1197 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 TDP2O95551 362 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 TACSTD2P09758 323 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 PSMC3P17980 439 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 KCNJ3P48549 501 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 NUTF2P61970 127 aaKnown RBP4.33□□□□□ -1.72
SCFD1-208ENST00000553278 AQP6Q13520 282 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 ZNF726P1Q15940 193 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 C5orf64Q2M2E5 130 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 EOGTQ5NDL2 527 aa4.33□□□□□ -1.72
SCFD1-208ENST00000553278 TMEM179Q6ZVK1 233 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms