RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 SDHAF3Q9NRP4 125 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ALKBH4Q9NXW9 302 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 MGAT4AQ9UM21 535 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 BOD1L1Q8NFC6 3051 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 MUC6Q6W4X9 2439 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 SULT2B1O00204 365 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 RER1O15258 196 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 EFNA2O43921 213 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 UPK3AO75631 287 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ABOP16442 354 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 CCNOP22674 350 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 HTR2BP41595 481 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ART1P52961 327 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 CLDN17P56750 224 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 CLRN1P58418 232 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 CHAF1BQ13112 559 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 MYBPHQ13203 477 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 EXOSC6Q5RKV6 272 aaKnown RBP5.02□□□□□ -1.61
LIMA1-215ENST00000552823 RNLSQ5VYX0 342 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF782Q6ZMW2 699 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-215ENST00000552823 FAM122BQ7Z309 247 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 GRINAQ7Z429 371 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF101Q8IZC7 436 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 MEIOBQ8N635 442 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 SCAIQ8N9R8 606 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 OR4S1Q8NGB4 309 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 OR10K1Q8NGX5 313 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 GPR148Q8TDV2 347 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 MAFIPQ8WZ33 124 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 AKAP1Q92667 903 aaKnown RBP eCLIP5.02□□□□□ -1.61
LIMA1-215ENST00000552823 SNAPC3Q92966 411 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 MRPL48Q96GC5 212 aaKnown RBP5.02□□□□□ -1.61
LIMA1-215ENST00000552823 UCN2Q96RP3 112 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 GPER1Q99527 375 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ISYNA1Q9NPH2 558 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 GPR27Q9NS67 375 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 ASH2LQ9UBL3 628 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 NOX1Q9Y5S8 564 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 R4GN57 208 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 DSPP15924 2871 aaKnown RBP5.02□□□□□ -1.61
LIMA1-215ENST00000552823 KIAA2026Q5HYC2 2103 aa5.02□□□□□ -1.61
LIMA1-215ENST00000552823 IGKV3D-11A0A0A0MRZ8 115 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 SLC22A23A1A5C7 686 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 TMEM221A6NGB7 291 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 OR4C45A6NMZ5 311 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF726A6NNF4 738 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 POM121CA8CG34 1229 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 PLPP3O14495 311 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 OGG1O15527 345 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 KRT33AO76009 404 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 ZFAND5O76080 213 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 YES1P07947 543 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF81P51508 661 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 SNU13P55769 128 aaKnown RBP5.01□□□□□ -1.61
LIMA1-215ENST00000552823 HSF1Q00613 529 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 SLC17A1Q14916 467 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 ST3GAL2Q16842 350 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 C2orf76Q3KRA6 126 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF468Q5VIY5 522 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-215ENST00000552823 Q6ZTK2 550 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 CMIPQ8IY22 773 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF283Q8N7M2 679 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 OR2T35Q8NGX2 323 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 SETD6Q8TBK2 473 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF431Q8TF32 576 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-215ENST00000552823 TMEM234Q8WY98 164 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 ACOT12Q8WYK0 555 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 RBP7Q96R05 134 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 PTDSS2Q9BVG9 487 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 ARRDC1-AS1Q9H2J1 176 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 OR51J1Q9H342 316 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 BANF2Q9H503 90 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 METTL17Q9H7H0 456 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-215ENST00000552823 SLC39A1Q9NY26 324 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 LRP12Q9Y561 859 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 B3GALT1Q9Y5Z6 326 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 IGHV3-64DA0A0J9YX35 117 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 A0A1W2PP11 408 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 TMEM235A6NFC5 223 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF205O95201 554 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 PNLIPP16233 465 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 TCN2P20062 427 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 ENPP1P22413 925 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 HSD11B1P28845 292 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 SLC6A8P48029 635 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 PNLIPRP2P54317 469 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 STARD6P59095 220 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 RRAS2P62070 204 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-215ENST00000552823 GLO1Q04760 184 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 MAB21L1Q13394 359 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 LINC00303Q3SY05 128 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 SLC22A6Q4U2R8 563 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 BEX5Q5H9J7 111 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 FNDC7Q5VTL7 733 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 RHBDD2Q6NTF9 364 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 KLHL24Q6TFL4 600 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 FAM57BQ71RH2 274 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 OR8H3Q8N146 312 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 TMEM105Q8N8V8 129 aa5.01□□□□□ -1.61
LIMA1-215ENST00000552823 LRRC75AQ8NAA5 344 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms