RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	VN1R1	Q9GZP7	353 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	ARL6	Q9H0F7	186 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	MMP25	Q9NPA2	562 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	C2orf72	A6NCS6	295 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	RP2	O75695	350 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	LPL	P06858	475 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	GIMD1	P0DJR0	217 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	CSRP1	P21291	193 aa	Known RBP	11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	FAU	P35544	74 aa	Known RBP	11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	DHPS	P49366	369 aa	Predicted RBP	11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	ZNF117	Q03924	483 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	BTN1A1	Q13410	526 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	MEST	Q5EB52	335 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	DCAF12L2	Q5VW00	463 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	OR7E24	Q6IFN5	339 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	ATG4D	Q86TL0	474 aa	Predicted RBP	11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	BIVM	Q86UB2	503 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	MUC20	Q8N307	709 aa	Predicted RBP	11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	PRSS35	Q8N3Z0	413 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	OR51S1	Q8NGJ8	323 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	OR8S1	Q8NH09	359 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	ADIPOR1	Q96A54	375 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	LPAR4	Q99677	370 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	COMMD4	Q9H0A8	199 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	C12orf10	Q9HB07	376 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	WNT16	Q9UBV4	365 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	IGKV3D-11	A0A0A0MRZ8	115 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	GGT3P	A6NGU5	568 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	LGALS8	O00214	317 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	RAD1	O60671	282 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	ZNF254	O75437	659 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	CTAG2	O75638	210 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	KDM4B	O94953	1096 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	IGKV3-11	P04433	115 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	NUP62	P37198	522 aa	Predicted RBP	11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	RPL18	Q07020	188 aa	Known RBP	11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	PLCXD2	Q0VAA5	305 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	MELK	Q14680	651 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	EBP	Q15125	230 aa	Known RBP	11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	FNDC7	Q5VTL7	733 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	TMEM81	Q6P7N7	255 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	ZNF417	Q8TAU3	575 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	DVL3	Q92997	716 aa	Predicted RBP	11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	SLC25A36	Q96CQ1	311 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	TSPAN32	Q96QS1	320 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	AMELY	Q99218	206 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	PRDM6	Q9NQX0	595 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	TRAV18	A0A075B6X5	111 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	TRBV5-7	A0A0A0MS05	114 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	ASAH2B	P0C7U1	165 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	GTF2F2	P13984	249 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	ELAVL1	Q15717	326 aa	Known RBP	11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	HYAL4	Q2M3T9	481 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	ANKRD16	Q6P6B7	361 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	D2HGDH	Q8N465	521 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	OR2AK2	Q8NG84	335 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	GPR148	Q8TDV2	347 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	ATOH1	Q92858	354 aa	Predicted RBP	11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	FOXN4	Q96NZ1	517 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	DMRTA2	Q96SC8	542 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	CHST6	Q9GZX3	395 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	RAB33B	Q9H082	229 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	SYT4	Q9H2B2	425 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	CHRD	Q9H2X0	955 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	TMEM138	Q9NPI0	162 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	MMACHC	Q9Y4U1	282 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	TCRBV16S1A1N1	A0A5B0	115 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	FRG2C	A6NGY1	282 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	C11orf98	E9PRG8	122 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204		F5H5P2	479 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	ITGA5	P08648	1049 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	CSF1	P09603	554 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	ALOX5AP	P20292	161 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	POU3F4	P49335	361 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	ZBTB44	Q8NCP5	570 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	OR6M1	Q8NGM8	313 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	SCARB1	Q8WTV0	552 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	TAAR8	Q969N4	342 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	TBL1XR1	Q9BZK7	514 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	MS4A7	Q9GZW8	240 aa	Predicted RBP	11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	COPS7A	Q9UBW8	275 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	CDV3	Q9UKY7	258 aa	Known RBP	11.28	□□□□□ -0.6
RNF4-222	ENST00000541204	SESN1	Q9Y6P5	492 aa		11.28	□□□□□ -0.6
RNF4-222	ENST00000541204		A0A1B0GX78	115 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	TMEM212	A6NML5	194 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	HMSD	A8MTL9	139 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204		K7ESF4	209 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	CDC40	O60508	579 aa	Known RBP eCLIP	11.27	□□□□□ -0.61	1e-6	■□□□□ 8.2
RNF4-222	ENST00000541204	B3GALNT1	O75752	331 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	PLG	P00747	810 aa	Predicted RBP	11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	CD3D	P04234	171 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	PNMT	P11086	282 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	GABRA1	P14867	456 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	KIR3DL2	P43630	455 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	ZNF440	Q8IYI8	595 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	SLC38A9	Q8NBW4	561 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	TNFAIP8L1	Q8WVP5	186 aa		11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	TSEN15	Q8WW01	171 aa	Known RBP	11.27	□□□□□ -0.61
RNF4-222	ENST00000541204	KCNG2	Q9UJ96	466 aa		11.27	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms