RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 PRAMEF8Q5VWM4 474 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 PRAMEF7Q5VXH5 474 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 MEX3DQ86XN8 651 aaKnown RBP11.29□□□□□ -0.6
USP3-203ENST00000538686 KREMEN2Q8NCW0 462 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 PLPP5Q8NEB5 264 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 OR14K1Q8NGZ2 314 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 MRGPRDQ8TDS7 321 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 DIO2Q92813 273 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 RAB8BQ92930 207 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 MOAP1Q96BY2 351 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 PELI1Q96FA3 418 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 PRRT1Q99946 306 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 URM1Q9BTM9 101 aaKnown RBP11.29□□□□□ -0.6
USP3-203ENST00000538686 RNF126Q9BV68 326 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 SLC5A7Q9GZV3 580 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 CMC2Q9NRP2 79 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 FAM212BQ9NTI7 297 aaPredicted RBP11.29□□□□□ -0.6
USP3-203ENST00000538686 FBXO4Q9UKT5 387 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 TCFL5Q9UL49 500 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 ZNF281Q9Y2X9 895 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 MMP24Q9Y5R2 645 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 RAB27BO00194 218 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 NDUFS8O00217 210 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 PIN1P1O15428 100 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 TBX19O60806 448 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 JTBO76095 146 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 DUS4LO95620 317 aaKnown RBP11.29□□□□□ -0.6
USP3-203ENST00000538686 GPANK1O95872 356 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 AMY2AP04746 511 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 OR2T7P0C7T2 308 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 RAB6AP20340 208 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 HOXD9P28356 352 aaPredicted RBP11.29□□□□□ -0.6
USP3-203ENST00000538686 BUD31P41223 144 aaPredicted RBP11.29□□□□□ -0.6
USP3-203ENST00000538686 HMGCS2P54868 508 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 IL13RA1P78552 427 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 H3F3AP84243 136 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 FAM3AP98173 230 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 MC1RQ01726 317 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 FNDC3BQ53EP0 1204 aaKnown RBP11.29□□□□□ -0.6
USP3-203ENST00000538686 PRRT3Q5FWE3 981 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 TMEM173Q86WV6 379 aaPredicted RBP11.29□□□□□ -0.6
USP3-203ENST00000538686 OR9K2Q8NGE7 335 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 OR13C2Q8NGS9 318 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 OR2T27Q8NH04 317 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 Q8WTZ3 238 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 SKA2Q8WVK7 121 aaPredicted RBP11.29□□□□□ -0.6
USP3-203ENST00000538686 CMBLQ96DG6 245 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 GPR87Q9BY21 358 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 CNTNAP3Q9BZ76 1288 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 SLC25A18Q9H1K4 315 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 NELFAQ9H3P2 528 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 SYNPO2LQ9H987 977 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 OR2S2Q9NQN1 319 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 GPR173Q9NS66 373 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 KLK14Q9P0G3 267 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 SUSD2Q9UGT4 822 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 GNG8Q9UK08 70 aa11.29□□□□□ -0.6
USP3-203ENST00000538686 MRPS33Q9Y291 106 aaKnown RBP11.29□□□□□ -0.6
USP3-203ENST00000538686 B4E171 279 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 EEF1E1-BLOC1S5C9J1V9 151 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 PRAMEF26H0Y7S4 382 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 CTAG2O75638 210 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 TRGC2P03986 189 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 CD82P27701 267 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 GPR4P46093 362 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 RGRP47804 291 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 SLC16A1P53985 500 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 MANFP55145 182 aaKnown RBP11.28□□□□□ -0.6
USP3-203ENST00000538686 INSM1Q01101 510 aaPredicted RBP11.28□□□□□ -0.6
USP3-203ENST00000538686 SGCGQ13326 291 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 HERPUD1Q15011 391 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 SOHLH1Q5JUK2 328 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 ZNF248Q8NDW4 579 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 OR8S1Q8NH09 359 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 SCAMP5Q8TAC9 235 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 SFXN5Q8TD22 340 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 RPS4Y2Q8TD47 263 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 SMPDL3AQ92484 453 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 SMIM14Q96QK8 99 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 INSM2Q96T92 566 aaPredicted RBP11.28□□□□□ -0.6
USP3-203ENST00000538686 ZNF2Q9BSG1 426 aaPredicted RBP11.28□□□□□ -0.6
USP3-203ENST00000538686 TAAR2Q9P1P5 351 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 LOC100509620A0A075B734 347 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 ZC3H12DA2A288 527 aaKnown RBP11.28□□□□□ -0.6
USP3-203ENST00000538686 DUXAA6NLW8 204 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 RIIAD1A6NNX1 92 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 ZNF705GA8MUZ8 300 aaPredicted RBP11.28□□□□□ -0.6
USP3-203ENST00000538686 SIAH2O43255 324 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 CDC40O60508 579 aaKnown RBP eCLIP11.28□□□□□ -0.6
USP3-203ENST00000538686 MRPL3P09001 348 aaKnown RBP11.28□□□□□ -0.6
USP3-203ENST00000538686 CST2P09228 141 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 CXCR1P25024 350 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 CFPP27918 469 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 GRK4P32298 578 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 PDX1P52945 283 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 ELOCQ15369 112 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 NR0B2Q15466 257 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 PLEKHS1Q5SXH7 462 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 C1orf194Q5T5A4 169 aa11.28□□□□□ -0.6
USP3-203ENST00000538686 PIP5KL1Q5T9C9 394 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms