RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PLPP2O43688 288 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 AHSA1O95433 338 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 TCEA1P23193 301 aaKnown RBP10.63□□□□□ -0.71
CLIP1-208ENST00000537004 GRPRP30550 384 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 LCN6P62502 163 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 TP53I3Q53FA7 332 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 WIPI1Q5MNZ9 446 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-208ENST00000537004 RTL6Q6ICC9 239 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 MTFR2Q6P444 385 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 ARSKQ6UWY0 536 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 RPTNQ6XPR3 784 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 YRDCQ86U90 279 aaKnown RBP10.63□□□□□ -0.71
CLIP1-208ENST00000537004 SYS1Q8N2H4 156 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 OR1J4Q8NGS1 313 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 NEIL3Q8TAT5 605 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 TP63Q9H3D4 680 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-208ENST00000537004 ACKR4Q9NPB9 350 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 B4GALT7Q9UBV7 327 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 FBXL2Q9UKC9 423 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 ZNF346Q9UL40 294 aaKnown RBP10.63□□□□□ -0.71
CLIP1-208ENST00000537004 VDAC3Q9Y277 283 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 FAM215AQ9Y5M1 114 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 WIF1Q9Y5W5 379 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 OR14I1A6ND48 311 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 C19orf84I3L1E1 186 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 DVL2O14641 736 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 CASKO14936 926 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 MAGEB4O15481 346 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-208ENST00000537004 OR2T1O43869 369 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 UPK1BO75841 260 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 CD53P19397 219 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 AHCYP23526 432 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 TNFSF8P32971 234 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 CDONQ4KMG0 1287 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 SP5Q6BEB4 398 aaPredicted RBP10.63□□□□□ -0.71
CLIP1-208ENST00000537004 SNX33Q8WV41 574 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 TMEM41AQ96HV5 264 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 SLC30A2Q9BRI3 323 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 KCNN2Q9H2S1 579 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 SDHAF3Q9NRP4 125 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 DAPK2Q9UIK4 370 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 COPS3Q9UNS2 423 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 MOKQ9UQ07 419 aa10.63□□□□□ -0.71
CLIP1-208ENST00000537004 SHISA3A0PJX4 238 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 DCTN6O00399 190 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 SNPHO15079 494 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 PLGP00747 810 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-208ENST00000537004 RENP00797 406 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 MSX1P28360 303 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 ACVR1BP36896 505 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 APOBEC1P41238 236 aaKnown RBP10.62□□□□□ -0.71
CLIP1-208ENST00000537004 ZNF41P51814 821 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-208ENST00000537004 DLX5P56178 289 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 SLC3A1Q07837 685 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 FOXF1Q12946 379 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 TRAM1Q15629 374 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 DMKNQ6E0U4 476 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-208ENST00000537004 XKRXQ6PP77 449 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 LAX1Q8IWV1 398 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 ZNF511Q8NB15 262 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 FAM83FQ8NEG4 500 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-208ENST00000537004 OR2T4Q8NH00 348 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 ZNF417Q8TAU3 575 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 PELI1Q96FA3 418 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 MRPL48Q96GC5 212 aaKnown RBP10.62□□□□□ -0.71
CLIP1-208ENST00000537004 ZNF587Q96SQ5 575 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-208ENST00000537004 MROQ9BYG7 248 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 SRA1Q9HD15 236 aaKnown RBP10.62□□□□□ -0.71
CLIP1-208ENST00000537004 ABCB10Q9NRK6 738 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 GNG8Q9UK08 70 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 GRIP1Q9Y3R0 1128 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 CMAHPQ9Y471 501 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 POLQO75417 2590 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 NCOA6Q14686 2063 aaPredicted RBP10.62□□□□□ -0.71
CLIP1-208ENST00000537004 IGLV3-32A0A0A0MS00 114 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 FTCDNL1E5RQL4 147 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 PLPP3O14495 311 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 XKRYO14609 159 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 ARHGEF9O43307 516 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 TBX1O43435 398 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 OR6A2O95222 327 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 HPNP05981 417 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 CAV3P56539 151 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 RPL27P61353 136 aaKnown RBP10.62□□□□□ -0.71
CLIP1-208ENST00000537004 HSF2Q03933 536 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 SNTA1Q13424 505 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 ACKR1Q16570 336 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 ZNF181Q2M3W8 571 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 TRIM16LQ309B1 348 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 TMEM81Q6P7N7 255 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 OR6V1Q8N148 313 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 AP3S1Q92572 193 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 SARAFQ96BY9 339 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 PGLYRP3Q96LB9 341 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 WDFY2Q96P53 400 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 TTYH2Q9BSA4 534 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 SYT4Q9H2B2 425 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 RYDENQ9NUL5 291 aaKnown RBP10.62□□□□□ -0.71
CLIP1-208ENST00000537004 ST6GALNAC2Q9UJ37 374 aa10.62□□□□□ -0.71
CLIP1-208ENST00000537004 FIGNL2A6NMB9 653 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms