RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 CRATP43155 626 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 RPS5P46782 204 aaKnown RBP5.29□□□□□ -1.56
CD44-237ENST00000534082 HPCAP84074 193 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 ZNF404Q494X3 552 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 XKR7Q5GH72 579 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 MTX3Q5HYI7 312 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 ATAD3BQ5T9A4 648 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 ATG16L1Q676U5 607 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 RFPL4BQ6ZWI9 263 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 C6orf120Q7Z4R8 191 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 CALHM3Q86XJ0 350 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 UEVLDQ8IX04 471 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 CLEC4FQ8N1N0 589 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 MIER2Q8N344 545 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 MFSD4AQ8N468 514 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 SLC22A24Q8N4F4 322 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 SDR9C7Q8NEX9 313 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 OR2Z1Q8NG97 314 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 ITLN1Q8WWA0 313 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 C3orf30Q96M34 536 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 TECTBQ96PL2 329 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 ASCL2Q99929 193 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 OR2J1Q9GZK6 312 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 SIRPDQ9H106 197 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 OR51I1Q9H343 314 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 GSTO2Q9H4Y5 243 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 RANBP3Q9H6Z4 567 aaPredicted RBP5.29□□□□□ -1.56
CD44-237ENST00000534082 ATP6V1HQ9UI12 483 aa5.29□□□□□ -1.56
CD44-237ENST00000534082 CAB39Q9Y376 341 aaPredicted RBP5.29□□□□□ -1.56
CD44-237ENST00000534082 KRTAP4-8A0A0G2JLE6 195 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 LOC102725191A0A1B0GVB3 256 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 H3BSA7 217 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 CFLARO15519 480 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 ANGPTL7O43827 346 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 FZD7O75084 574 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 FARS2O95363 451 aaKnown RBP5.28□□□□□ -1.56
CD44-237ENST00000534082 AGR2O95994 175 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 CYB5R3P00387 301 aaPredicted RBP5.28□□□□□ -1.56
CD44-237ENST00000534082 HPRP00739 348 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 LIPFP07098 398 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 HLA-DOBP13765 273 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 NCF2P19878 526 aaPredicted RBP5.28□□□□□ -1.56
CD44-237ENST00000534082 IMPDH1P20839 514 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 GRPRP30550 384 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 RPL3P39023 403 aaKnown RBP5.28□□□□□ -1.56
CD44-237ENST00000534082 CSNK1A1P48729 337 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 ANXA11P50995 505 aaKnown RBP5.28□□□□□ -1.56
CD44-237ENST00000534082 COPZ1P61923 177 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 HBA1P69905 142 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 PLP2Q04941 152 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 EGR4Q05215 589 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 MLANAQ16655 118 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 LSM12Q3MHD2 195 aaKnown RBP5.28□□□□□ -1.56
CD44-237ENST00000534082 SLC36A2Q495M3 483 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 RFTN2Q52LD8 501 aaPredicted RBP5.28□□□□□ -1.56
CD44-237ENST00000534082 GPAT3Q53EU6 434 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 RUNDC3AQ59EK9 446 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 MRPL2Q5T653 305 aaKnown RBP5.28□□□□□ -1.56
CD44-237ENST00000534082 WBP2NLQ6ICG8 309 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 TNFAIP8L2Q6P589 184 aaPredicted RBP5.28□□□□□ -1.56
CD44-237ENST00000534082 LYPD2Q6UXB3 125 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 ZNF841Q6ZN19 808 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 SLC16A14Q7RTX9 510 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 VRK2Q86Y07 508 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 RBM15BQ8NDT2 890 aaKnown RBP5.28□□□□□ -1.56
CD44-237ENST00000534082 VPS37AQ8NEZ2 397 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 OR2T11Q8NH01 316 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 L3HYPDHQ96EM0 354 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 OR2V2Q96R30 315 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 CHID1Q9BWS9 393 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 GPR61Q9BZJ8 451 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 YY1AP1Q9H869 796 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 GCM1Q9NP62 436 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 ATAD3AQ9NVI7 634 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 TMEM38BQ9NVV0 291 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 IL19Q9UHD0 177 aa5.28□□□□□ -1.56
CD44-237ENST00000534082 C5orf49A4QMS7 147 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 ZNF726A6NNF4 738 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 H3BUX3 64 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 IFNL4K9M1U5 179 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 SLC28A1O00337 649 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 SURF4O15260 269 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 PAHP00439 452 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 IFNW1P05000 195 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 CHRM2P08172 466 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 GSTA1P08263 222 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 INHBAP08476 426 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 GKN3PP0CG01 181 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 NEFHP12036 1026 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 NQO1P15559 274 aaKnown RBP5.27□□□□□ -1.57
CD44-237ENST00000534082 ATP5F1P24539 256 aaPredicted RBP5.27□□□□□ -1.57
CD44-237ENST00000534082 ARRB2P32121 409 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 MAGEA4P43358 317 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 PRKAA2P54646 552 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 PPP1CBP62140 327 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 HSF2Q03933 536 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 C2orf54Q08AI8 447 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 CALCOCO2Q13137 446 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 GNA13Q14344 377 aa5.27□□□□□ -1.57
CD44-237ENST00000534082 FAM201AQ5SY85 155 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms