RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 C12orf71A8MTZ7 269 aa17.74■□□□□ 0.43
VPS28-206ENST00000526734 VWC2LB2RUY7 222 aa17.74■□□□□ 0.43
VPS28-206ENST00000526734 LY6HO94772 140 aa17.74■□□□□ 0.43
VPS28-206ENST00000526734 ZNF32P17041 273 aa17.74■□□□□ 0.43
VPS28-206ENST00000526734 CALB2P22676 271 aa17.74■□□□□ 0.43
VPS28-206ENST00000526734 KRR1Q13601 381 aaKnown RBP17.74■□□□□ 0.43
VPS28-206ENST00000526734 TMEM249Q2WGJ8 235 aa17.74■□□□□ 0.43
VPS28-206ENST00000526734 DPY19L2P2Q6ZN68 376 aa17.74■□□□□ 0.43
VPS28-206ENST00000526734 Q96M85 177 aa17.74■□□□□ 0.43
VPS28-206ENST00000526734 REV1Q9UBZ9 1251 aa17.74■□□□□ 0.43
VPS28-206ENST00000526734 ADAM18Q9Y3Q7 739 aa17.74■□□□□ 0.43
VPS28-206ENST00000526734 TIMM10BQ9Y5J6 103 aa17.74■□□□□ 0.43
VPS28-206ENST00000526734 FN1P02751 2386 aaKnown RBP17.73■□□□□ 0.43
VPS28-206ENST00000526734 A0A1W2PPL8 197 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 PRSS37A4D1T9 235 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 B2RBV5 119 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 INAFM1C9JVW0 142 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 DIRAS1O95057 198 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 ADRA2AP08913 450 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 ZNF26P17031 533 aaPredicted RBP17.73■□□□□ 0.43
VPS28-206ENST00000526734 NR4A2P43354 598 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 RPS6KA3P51812 740 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 SEC23BQ15437 767 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 MOGQ16653 247 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 MESTQ5EB52 335 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 SMARCD3Q6STE5 483 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 OR52J3Q8NH60 311 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 C11orf40Q8WZ69 217 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 TMCC3Q9ULS5 477 aa17.73■□□□□ 0.43
VPS28-206ENST00000526734 TEX13CA0A0J9YWL9 993 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 A0A1W2PPW3 197 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 KRT36O76013 467 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 TXNDC12O95881 172 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 DAOP14920 347 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 FPR3P25089 353 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 STOMP27105 288 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 GIFP27352 417 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 APEX1P27695 318 aaKnown RBP17.72■□□□□ 0.43
VPS28-206ENST00000526734 LAP3P28838 519 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 MSX2P35548 267 aaPredicted RBP17.72■□□□□ 0.43
VPS28-206ENST00000526734 GDI2P50395 445 aaKnown RBP17.72■□□□□ 0.43
VPS28-206ENST00000526734 UCP2P55851 309 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 KLF3P57682 345 aaPredicted RBP17.72■□□□□ 0.43
VPS28-206ENST00000526734 MSMPQ1L6U9 139 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 ZDHHC21Q8IVQ6 265 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 ZNF786Q8N393 782 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 LINC00471Q8N535 108 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 CLDN22Q8N7P3 220 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 SYT3Q9BQG1 590 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 OR2H1Q9GZK4 316 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 POLE4Q9NR33 117 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 SLCO1C1Q9NYB5 712 aa17.72■□□□□ 0.43
VPS28-206ENST00000526734 VSX1Q9NZR4 365 aaPredicted RBP17.72■□□□□ 0.43
VPS28-206ENST00000526734 EIF3KQ9UBQ5 218 aaKnown RBP17.72■□□□□ 0.43
VPS28-206ENST00000526734 PRPF19Q9UMS4 504 aaKnown RBP17.72■□□□□ 0.43
VPS28-206ENST00000526734 ZANQ9Y493 2812 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 IGLV3-9A0A075B6K5 115 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 IMPA2O14732 288 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 ICMTO60725 284 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 STAMBPO95630 424 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 LCKP06239 509 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 FAM157BP0CG42 384 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 COX5BP10606 129 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 ZNF250P15622 560 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 RRM2P31350 389 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 GZMKP49863 264 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 PSG4Q00888 419 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 SCRN3Q0VDG4 424 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 CARTPTQ16568 116 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 PAQR4Q8N4S7 273 aaPredicted RBP17.71■□□□□ 0.43
VPS28-206ENST00000526734 CPEB3Q8NE35 698 aaKnown RBP17.71■□□□□ 0.43
VPS28-206ENST00000526734 SYNPRQ8TBG9 265 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 FANK1Q8TC84 345 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 UBASH3BQ8TF42 649 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 POM121L2Q96KW2 1035 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 DUSP13Q9UII6 198 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 ADAM21Q9UKJ8 722 aa17.71■□□□□ 0.43
VPS28-206ENST00000526734 NDRG4Q9ULP0 352 aaKnown RBP17.71■□□□□ 0.43
VPS28-206ENST00000526734 CR1P17927 2039 aa17.71■□□□□ 0.42
VPS28-206ENST00000526734 H3BSA7 217 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 H7C1C5 153 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 OR10H3O60404 316 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 CRLF1O75462 422 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 KHDRBS3O75525 346 aaKnown RBP17.7■□□□□ 0.42
VPS28-206ENST00000526734 MT-ND5P03915 603 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 IGFBP1P08833 259 aaPredicted RBP17.7■□□□□ 0.42
VPS28-206ENST00000526734 CCL2P13500 99 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 SLC6A6P31641 620 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 LCN6P62502 163 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 ENDOGQ14249 297 aaKnown RBP17.7■□□□□ 0.42
VPS28-206ENST00000526734 NKPD1Q17RQ9 610 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 LCN8Q6JVE9 175 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 PGM2L1Q6PCE3 622 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 DNM1P34Q6PK57 102 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 ARL9Q6T311 187 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 ZER1Q7Z7L7 766 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 SNX33Q8WV41 574 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 FOXN4Q96NZ1 517 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 SNX18Q96RF0 628 aa17.7■□□□□ 0.42
VPS28-206ENST00000526734 WNT5BQ9H1J7 359 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms