RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 AKAIN1P0CW23 69 aa19.09■□□□□ 0.65
VPS28-205ENST00000526204 FSTP19883 344 aa19.09■□□□□ 0.65
VPS28-205ENST00000526204 RNF4P78317 190 aa19.09■□□□□ 0.65
VPS28-205ENST00000526204 SMAD4Q13485 552 aaKnown RBP19.09■□□□□ 0.65
VPS28-205ENST00000526204 EXOSC2Q13868 293 aaKnown RBP19.09■□□□□ 0.65
VPS28-205ENST00000526204 ETFDHQ16134 617 aa19.09■□□□□ 0.65
VPS28-205ENST00000526204 OR7E24Q6IFN5 339 aa19.09■□□□□ 0.65
VPS28-205ENST00000526204 DNM1P34Q6PK57 102 aa19.09■□□□□ 0.65
VPS28-205ENST00000526204 LANCL3Q6ZV70 420 aa19.09■□□□□ 0.65
VPS28-205ENST00000526204 ST8SIA1Q92185 356 aa19.09■□□□□ 0.65
VPS28-205ENST00000526204 PIPOXQ9P0Z9 390 aa19.09■□□□□ 0.65
VPS28-205ENST00000526204 LRP12Q9Y561 859 aa19.09■□□□□ 0.65
VPS28-205ENST00000526204 PCDH15Q96QU1 1955 aa19.08■□□□□ 0.65
VPS28-205ENST00000526204 FTCDNL1E5RQL4 147 aa19.08■□□□□ 0.64
VPS28-205ENST00000526204 PYCARD-AS1I3L0S3 204 aa19.08■□□□□ 0.64
VPS28-205ENST00000526204 M0R233 179 aa19.08■□□□□ 0.64
VPS28-205ENST00000526204 TNRC18O15417 2968 aaPredicted RBP19.08■□□□□ 0.64
VPS28-205ENST00000526204 MPC2O95563 127 aa19.08■□□□□ 0.64
VPS28-205ENST00000526204 ZP4Q12836 540 aa19.08■□□□□ 0.64
VPS28-205ENST00000526204 CLLU1Q5K131 121 aa19.08■□□□□ 0.64
VPS28-205ENST00000526204 OTPQ5XKR4 325 aa19.08■□□□□ 0.64
VPS28-205ENST00000526204 WDR74Q6RFH5 385 aaPredicted RBP19.08■□□□□ 0.64
VPS28-205ENST00000526204 OR6N1Q8NGY5 312 aa19.08■□□□□ 0.64
VPS28-205ENST00000526204 GINS4Q9BRT9 223 aa19.08■□□□□ 0.64
VPS28-205ENST00000526204 TGIF2Q9GZN2 237 aa19.08■□□□□ 0.64
VPS28-205ENST00000526204 MEGF11A6BM72 1044 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 SOX1O00570 391 aaPredicted RBP19.07■□□□□ 0.64
VPS28-205ENST00000526204 MFGE8Q08431 387 aaPredicted RBP19.07■□□□□ 0.64
VPS28-205ENST00000526204 MELKQ14680 651 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 UBXN2BQ14CS0 331 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 FAM198BQ6UWH4 519 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 OR1J4Q8NGS1 313 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 C17orf50Q8WW18 174 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 TMPRSS13Q9BYE2 586 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 CA10Q9NS85 328 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 CTSFQ9UBX1 484 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 SRPK3Q9UPE1 567 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 COA3Q9Y2R0 106 aaPredicted RBP19.07■□□□□ 0.64
VPS28-205ENST00000526204 MAB21L2Q9Y586 359 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 ANKUB1A6NFN9 424 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 CD37P11049 281 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 ZNF823P16415 610 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 C17orf67Q0P5P2 114 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 SLC36A1Q7Z2H8 476 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 CCDC28AQ8IWP9 274 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 ELMOD2Q8IZ81 293 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 ATG5Q9H1Y0 275 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 R4GMQ9 66 aa19.07■□□□□ 0.64
VPS28-205ENST00000526204 OR2M5A3KFT3 312 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 NPIPB13A6NJU9 1138 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 NPIPB4C9JG80 1138 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 SULT1C2O00338 296 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 ADAM10O14672 748 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 FBXO45P0C2W1 286 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 GTF2F2P13984 249 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 IGFBP3P17936 291 aaPredicted RBP19.06■□□□□ 0.64
VPS28-205ENST00000526204 APOBEC1P41238 236 aaKnown RBP19.06■□□□□ 0.64
VPS28-205ENST00000526204 DAP3P51398 398 aaKnown RBP19.06■□□□□ 0.64
VPS28-205ENST00000526204 SUMO3P55854 103 aaPredicted RBP19.06■□□□□ 0.64
VPS28-205ENST00000526204 DLX5P56178 289 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 ACTBP60709 375 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 RAB14P61106 215 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 ACTG1P63261 375 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 GRK1Q15835 563 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 ASPHD2Q6ICH7 369 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 MFSD8Q8NHS3 518 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 SEMA4CQ9C0C4 833 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 HHLA2Q9UM44 414 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 TMEM272A0A1B0GTI8 110 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 PLSCR5A0PG75 271 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 RAD1O60671 282 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 HTR2CP28335 458 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 PLPP7Q8NBV4 271 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 PPP1R14AQ96A00 147 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 SLC25A28Q96A46 364 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 RBP7Q96R05 134 aa19.06■□□□□ 0.64
VPS28-205ENST00000526204 ZNF768Q9H5H4 540 aaKnown RBP19.06■□□□□ 0.64
VPS28-205ENST00000526204 PRMT8Q9NR22 394 aaPredicted RBP19.06■□□□□ 0.64
VPS28-205ENST00000526204 A0A1W2PPC1 479 aa19.05■□□□□ 0.64
VPS28-205ENST00000526204 NPIPA5E9PKD4 350 aa19.05■□□□□ 0.64
VPS28-205ENST00000526204 KDM4BO94953 1096 aa19.05■□□□□ 0.64
VPS28-205ENST00000526204 ISG15P05161 165 aa19.05■□□□□ 0.64
VPS28-205ENST00000526204 IGFBP4P22692 258 aa19.05■□□□□ 0.64
VPS28-205ENST00000526204 PTGS2P35354 604 aa19.05■□□□□ 0.64
VPS28-205ENST00000526204 AP2S1P53680 142 aaPredicted RBP19.05■□□□□ 0.64
VPS28-205ENST00000526204 DEGS2Q6QHC5 323 aa19.05■□□□□ 0.64
VPS28-205ENST00000526204 H1FNTQ75WM6 255 aaPredicted RBP19.05■□□□□ 0.64
VPS28-205ENST00000526204 SLC26A10Q8NG04 563 aa19.05■□□□□ 0.64
VPS28-205ENST00000526204 OR6M1Q8NGM8 313 aa19.05■□□□□ 0.64
VPS28-205ENST00000526204 GPX8Q8TED1 209 aa19.05■□□□□ 0.64
VPS28-205ENST00000526204 SLC25A44Q96H78 314 aaPredicted RBP19.05■□□□□ 0.64
VPS28-205ENST00000526204 NPIPA1Q9UND3 350 aa19.05■□□□□ 0.64
VPS28-205ENST00000526204 MS4A18H0YCH9 400 aa19.04■□□□□ 0.64
VPS28-205ENST00000526204 SRSF10O75494 262 aaKnown RBP19.04■□□□□ 0.64
VPS28-205ENST00000526204 AQP8O94778 261 aa19.04■□□□□ 0.64
VPS28-205ENST00000526204 WNT11O96014 354 aa19.04■□□□□ 0.64
VPS28-205ENST00000526204 VSIG10L2P0DP72 767 aa19.04■□□□□ 0.64
VPS28-205ENST00000526204 NFYAP23511 347 aaPredicted RBP19.04■□□□□ 0.64
VPS28-205ENST00000526204 PCK2Q16822 640 aa19.04■□□□□ 0.64
VPS28-205ENST00000526204 MS4A18Q3C1V0 323 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms