RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CRABP1P29762 137 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 GSTT1P30711 240 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 CDAP32320 146 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 CDH11P55287 796 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 ZNF91Q05481 1191 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 KLHL12Q53G59 568 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 ALKBH2Q6NS38 261 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 DNM1P34Q6PK57 102 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 GID4Q8IVV7 300 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 ZNF511Q8NB15 262 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 ACBD4Q8NC06 268 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 SLC26A10Q8NG04 563 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 ZMYND19Q96E35 227 aaPredicted RBP13.42□□□□□ -0.26
LSM1-203ENST00000520755 WFIKKN1Q96NZ8 548 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 SPOCK3Q9BQ16 436 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 RHNO1Q9BSD3 238 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 TMEM38BQ9NVV0 291 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 CRIM1Q9NZV1 1036 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 BAHCC1Q9P281 2608 aa13.42□□□□□ -0.26
LSM1-203ENST00000520755 PRR14LQ5THK1 2151 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 A0A1W2PPL8 197 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 TVP23AA6NH52 213 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 ZNF99A8MXY4 864 aaPredicted RBP13.41□□□□□ -0.26
LSM1-203ENST00000520755 B4GALT1P15291 398 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 HTR1FP30939 366 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 ARF1P84077 181 aaKnown RBP13.41□□□□□ -0.26
LSM1-203ENST00000520755 TGFBR3Q03167 851 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 GGTLC2Q14390 218 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 GABRA6Q16445 453 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 MEP1BQ16820 701 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 SLC35D3Q5M8T2 416 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 MEDAGQ5VYS4 303 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 KLHL24Q6TFL4 600 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 MEPCEQ7L2J0 689 aaKnown RBP13.41□□□□□ -0.26
LSM1-203ENST00000520755 ZNF627Q7L945 461 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 OR1K1Q8NGR3 316 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 OR6K6Q8NGW6 343 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 TEAD3Q99594 435 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 FOXB1Q99853 325 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 Q9H521 79 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 MARCH7Q9H992 704 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 POLE4Q9NR33 117 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 COMMD3-BMI1R4GMX3 469 aa13.41□□□□□ -0.26
LSM1-203ENST00000520755 A0A096LPE4 126 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 A0A1W2PPZ6 126 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 A0A1W2PR80 420 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 SLC1A7O00341 560 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 SELENOFO60613 162 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 DBTP11182 482 aaKnown RBP13.4□□□□□ -0.26
LSM1-203ENST00000520755 PPP3CBP16298 524 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 LAP3P28838 519 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 SH3BGRP55822 239 aaPredicted RBP13.4□□□□□ -0.26
LSM1-203ENST00000520755 MRPS34P82930 218 aaKnown RBP13.4□□□□□ -0.26
LSM1-203ENST00000520755 HIKESHIQ53FT3 197 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 OR7E24Q6IFN5 339 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 UGT2A3Q6UWM9 527 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 C22orf34Q6ZV56 151 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 WFDC8Q8IUA0 241 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 GLB1L2Q8IW92 636 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 TIGD4Q8IY51 512 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 C1orf162Q8NEQ5 155 aaPredicted RBP13.4□□□□□ -0.26
LSM1-203ENST00000520755 OR52N5Q8NH56 324 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 C11orf40Q8WZ69 217 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 OR10A4Q9H209 315 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 WDR76Q9H967 626 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 AMBNQ9NP70 447 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 EMC7Q9NPA0 242 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 CLN6Q9NWW5 311 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 ZNF224Q9NZL3 707 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 MOKQ9UQ07 419 aa13.4□□□□□ -0.26
LSM1-203ENST00000520755 ZNF503-AS2A6NEH8 195 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 OR5H1A6NKK0 313 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 SLC22A31A6NKX4 558 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 XPNPEP2O43895 674 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 APOL3O95236 402 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 THBDP07204 575 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 ADRA2AP08913 450 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 MRPL3P09001 348 aaKnown RBP13.39□□□□□ -0.27
LSM1-203ENST00000520755 EPXP11678 715 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 HOXC12P31275 282 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 RPS27P42677 84 aaKnown RBP13.39□□□□□ -0.27
LSM1-203ENST00000520755 SLC15A1P46059 708 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 ZNF84P51523 738 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 RPS7P62081 194 aaKnown RBP13.39□□□□□ -0.27
LSM1-203ENST00000520755 HSF2Q03933 536 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 GLO1Q04760 184 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 ENDOGQ14249 297 aaKnown RBP13.39□□□□□ -0.27
LSM1-203ENST00000520755 TAB1Q15750 504 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 KCNMB1Q16558 191 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 C6orf141Q5SZD1 244 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 ZNF787Q6DD87 383 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 SHFQ7M4L6 423 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 FAM222BQ8WU58 562 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 DACH2Q96NX9 599 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 ADGRL4Q9HBW9 690 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 SLC24A3Q9HC58 644 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 HAO2Q9NYQ3 351 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 WARS2Q9UGM6 360 aaKnown RBP13.39□□□□□ -0.27
LSM1-203ENST00000520755 PTPN13Q12923 2485 aa13.39□□□□□ -0.27
LSM1-203ENST00000520755 CASKO14936 926 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms