RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 CMTM4Q8IZR5 234 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 OR51S1Q8NGJ8 323 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 HGDQ93099 445 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 DOK2O60496 412 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 PAPLNO95428 1278 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 GABRA1P14867 456 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 LAIR1Q6GTX8 287 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 SLC35F3Q8IY50 421 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 PFN4Q8NHR9 129 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 EID2BQ96D98 161 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 MRGPRX3Q96LB0 322 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 SLC52A3Q9NQ40 469 aa12.02□□□□□ -0.49
TCOF1-213ENST00000514442 SBF2Q86WG5 1849 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 OR5H14A6NHG9 310 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 TMEM200CA6NKL6 621 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 GPR31O00270 319 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 MPIG6BO95866 241 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 MBP02144 154 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 FPR3P25089 353 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 CSNK2A1P68400 391 aaPredicted RBP12.01□□□□□ -0.49
TCOF1-213ENST00000514442 MELKQ14680 651 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 TMEM201Q5SNT2 666 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 AADACL4Q5VUY2 407 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 SPTSSAQ969W0 71 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 WDR89Q96FK6 387 aaPredicted RBP12.01□□□□□ -0.49
TCOF1-213ENST00000514442 SLC25A21Q9BQT8 299 aaPredicted RBP12.01□□□□□ -0.49
TCOF1-213ENST00000514442 TEX101Q9BY14 249 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 ANKRD19PQ9H560 264 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 PUS1Q9Y606 427 aaKnown RBP eCLIP12.01□□□□□ -0.49
TCOF1-213ENST00000514442 FER1L6Q2WGJ9 1857 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 A0A1B0GX78 115 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 A0A1W2PPC4 97 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 CRTAPO75718 401 aaPredicted RBP12.01□□□□□ -0.49
TCOF1-213ENST00000514442 SPP1P10451 314 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 SRMP19623 302 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 GFERP55789 205 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 CRMP1Q14194 572 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 VWA2Q5GFL6 755 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 RNLSQ5VYX0 342 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 ZNF600Q6ZNG1 722 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 ABHD12BQ7Z5M8 362 aaPredicted RBP12.01□□□□□ -0.49
TCOF1-213ENST00000514442 NKAIN4Q8IVV8 208 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 SLC35A4Q96G79 324 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 SLC46A1Q96NT5 459 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 ELOVL3Q9HB03 270 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 CTSFQ9UBX1 484 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 GABRG2P18507 467 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 BTG2P78543 158 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 FOXK1P85037 733 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 GNMTQ14749 295 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 LINC00303Q3SY05 128 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 CLEC9AQ6UXN8 241 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 ZNF704Q6ZNC4 412 aaPredicted RBP12.01□□□□□ -0.49
TCOF1-213ENST00000514442 CD163Q86VB7 1156 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 RNF113BQ8IZP6 322 aaKnown RBP12.01□□□□□ -0.49
TCOF1-213ENST00000514442 OR5M1Q8NGP8 315 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 OR2A1Q8NGT9 310 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 BAHD1Q8TBE0 780 aaPredicted RBP12.01□□□□□ -0.49
TCOF1-213ENST00000514442 LYRM4Q9HD34 91 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 A0A0B4J203 849 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 TSPAN11A1L157 253 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 PPM1DO15297 605 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 GNRHRP30968 328 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 BSGP35613 385 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 SLC25A35Q3KQZ1 300 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 ELFN2Q5R3F8 820 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 HIST2H3PS2Q5TEC6 136 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 LAMTOR1Q6IAA8 161 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 BEND4Q6ZU67 534 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 CBLN2Q8IUK8 224 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 NXF5Q9H1B4 397 aaKnown RBP12.01□□□□□ -0.49
TCOF1-213ENST00000514442 GAR1Q9NY12 217 aaKnown RBP12.01□□□□□ -0.49
TCOF1-213ENST00000514442 PCDHB10Q9UN67 800 aa12.01□□□□□ -0.49
TCOF1-213ENST00000514442 TRIP11Q15643 1979 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 ZNF705FA8MVS1 300 aaPredicted RBP12□□□□□ -0.49
TCOF1-213ENST00000514442 ZNF705DP0CH99 300 aaPredicted RBP12□□□□□ -0.49
TCOF1-213ENST00000514442 ZNF705BP0CI00 300 aaPredicted RBP12□□□□□ -0.49
TCOF1-213ENST00000514442 GAAP10253 952 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 ZNF44P15621 663 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 GALP22466 123 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 PRPH2P23942 346 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 SDHAP31040 664 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 LINC00696Q6ZRV3 163 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 OR2W3Q7Z3T1 314 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 SPRED2Q7Z698 418 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 LRRC18Q8N456 261 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 C20orf24Q9BUV8 137 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 TINAGL1Q9GZM7 467 aaPredicted RBP12□□□□□ -0.49
TCOF1-213ENST00000514442 SH3BGRL2Q9UJC5 107 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 TMED7-TICAM2A0A0A6YYA0 188 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 CISD3P0C7P0 127 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 POLR2HP52434 150 aaKnown RBP12□□□□□ -0.49
TCOF1-213ENST00000514442 UBE2KP61086 200 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 POLR2GP62487 172 aaKnown RBP eCLIP12□□□□□ -0.49
TCOF1-213ENST00000514442 DVL3Q92997 716 aaPredicted RBP12□□□□□ -0.49
TCOF1-213ENST00000514442 PPP1R3EQ9H7J1 279 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 GPR160Q9UJ42 338 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 MCTS1Q9ULC4 181 aaKnown RBP12□□□□□ -0.49
TCOF1-213ENST00000514442 TMED7Q9Y3B3 224 aa12□□□□□ -0.49
TCOF1-213ENST00000514442 EPHA4P54764 986 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms