RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 SDC2P34741 201 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 GGT2P36268 569 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 LIPAP38571 399 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 APOBEC1P41238 236 aaKnown RBP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 MAP2K4P45985 399 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 ANXA11P50995 505 aaKnown RBP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 MAP2K6P52564 334 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 UFM1P61960 85 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 RPS26P62854 115 aaKnown RBP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 PPP3R1P63098 170 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 KCNJ10P78508 379 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 FLI1Q01543 452 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 FOXF1Q12946 379 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 NPRL3Q12980 569 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 SKP2Q13309 424 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 P2RY6Q15077 328 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 TOMM34Q15785 309 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 ZNF239Q16600 458 aaKnown RBP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 DEFB113Q30KQ7 82 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 PAGE3Q5JUK9 113 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 TMEM201Q5SNT2 666 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 TYW3Q6IPR3 259 aaKnown RBP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 TEX261Q6UWH6 196 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 STAC2Q6ZMT1 411 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 PLEKHM3Q6ZWE6 761 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 RRM2BQ7LG56 351 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 SERPINA11Q86U17 422 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 GPAT4Q86UL3 456 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 ANKRD46Q86W74 232 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 CALHM3Q86XJ0 350 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 SNX29P2Q8IUI4 249 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 YIPF7Q8N8F6 280 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 C19orf18Q8NEA5 215 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 FAM71CQ8NEG0 241 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 AKAP1Q92667 903 aaKnown RBP eCLIP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 UFD1Q92890 307 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 PIGTQ969N2 578 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 OPALINQ96PE5 141 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 OR52E6Q96RD3 313 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 PANX1Q96RD7 426 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 KLHDC3Q9BQ90 382 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 MARVELD1Q9BSK0 173 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 THUMPD3Q9BV44 507 aaKnown RBP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 RIBC2Q9H4K1 309 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 TMEM185BQ9H7F4 350 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 REEP1Q9H902 201 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 SCPEP1Q9HB40 452 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 RANGRFQ9HD47 186 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 ISYNA1Q9NPH2 558 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 EXOSC3Q9NQT5 275 aaKnown RBP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 SERINC1Q9NRX5 453 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 ACER3Q9NUN7 267 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 KLHL28Q9NXS3 571 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 COPZ2Q9P299 210 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 KLHL13Q9P2N7 655 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 UBQLN2Q9UHD9 624 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 CORO2BQ9UQ03 480 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 POFUT2Q9Y2G5 429 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 WDR45Q9Y484 360 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 MAGED1Q9Y5V3 778 aaPredicted RBP7.12□□□□□ -1.27
SCN1A-207ENST00000507401 U3KQ87 197 aa7.12□□□□□ -1.27
SCN1A-207ENST00000507401 MTORP42345 2549 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 A0A096LPI6 279 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 A0A1W2PPR1 153 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ARRDC5A6NEK1 342 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ZNF670-ZNF695F2Z2N8 137 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 HMGN4O00479 90 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 KIAA0513O60268 411 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 CNOT4O95628 575 aaKnown RBP7.11□□□□□ -1.27
SCN1A-207ENST00000507401 DHFRP00374 187 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 SERPINA1P01009 418 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 SCG5P05408 212 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 FABP3P05413 133 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ADORA3P0DMS8 318 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ATF4P18848 351 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-207ENST00000507401 CD53P19397 219 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 KLK2P20151 261 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 SHC1P29353 583 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 AGTR1P30556 359 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 HOXC12P31275 282 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 SFTPDP35247 375 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 CHI3L1P36222 383 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-207ENST00000507401 KHKP50053 298 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ADAM8P78325 824 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 C1DQ13901 141 aaKnown RBP7.11□□□□□ -1.27
SCN1A-207ENST00000507401 VEZF1Q14119 521 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 MAPK14Q16539 360 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ACKR1Q16570 336 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ZSWIM7Q19AV6 140 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 BEX5Q5H9J7 111 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 LRIF1Q5T3J3 769 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 NXNL2Q5VZ03 156 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 TRIQKQ629K1 86 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ALKBH2Q6NS38 261 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 C3orf33Q6P1S2 294 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ZNF621Q6ZSS3 439 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 FCRLAQ7L513 359 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 KRT74Q7RTS7 529 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 SSX8Q7RTT4 187 aa7.11□□□□□ -1.27
SCN1A-207ENST00000507401 ZDHHC21Q8IVQ6 265 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms