RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 DCAF16Q9NXF7 216 aa10.73□□□□□ -0.69
SKA1-205ENST00000494518 NKIRAS2Q9NYR9 191 aa10.73□□□□□ -0.69
SKA1-205ENST00000494518 SH3GLB1Q9Y371 365 aa10.73□□□□□ -0.69
SKA1-205ENST00000494518 PPIAL4AQ9Y536 164 aa10.73□□□□□ -0.69
SKA1-205ENST00000494518 GCH1P30793 250 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 OR1E2P47887 323 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 COMPP49747 757 aaPredicted RBP10.72□□□□□ -0.69
SKA1-205ENST00000494518 GDI2P50395 445 aaKnown RBP10.72□□□□□ -0.69
SKA1-205ENST00000494518 DAP3P51398 398 aaKnown RBP10.72□□□□□ -0.69
SKA1-205ENST00000494518 ARFIP2P53365 341 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 PIN1Q13526 163 aaPredicted RBP10.72□□□□□ -0.69
SKA1-205ENST00000494518 LAPTM4AQ15012 233 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 VMACQ2NL98 169 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 ZNF718Q3SXZ3 478 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 RABL3Q5HYI8 236 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 C10orf128Q5T292 105 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 IGFN1Q86VF2 1251 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 ZDHHC22Q8N966 263 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 ABHD4Q8TB40 342 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 RAB1CQ92928 201 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 POM121L2Q96KW2 1035 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 DCLRE1CQ96SD1 692 aaKnown RBP10.72□□□□□ -0.69
SKA1-205ENST00000494518 SUCNR1Q9BXA5 334 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 C1QTNF5Q9BXJ0 243 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 RABEP2Q9H5N1 569 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 C7orf69Q9H7B7 122 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 SIAEQ9HAT2 523 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 OPN4Q9UHM6 478 aa10.72□□□□□ -0.69
SKA1-205ENST00000494518 PLSCR5A0PG75 271 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 PRSS23O95084 383 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 NGFP01138 241 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 LAP3P28838 519 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 GZMMP51124 257 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 MMP15P51511 669 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 MRPS34P82930 218 aaKnown RBP10.71□□□□□ -0.69
SKA1-205ENST00000494518 PSG4Q00888 419 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 MOGQ16653 247 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 MMEL1Q495T6 779 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 NRN1LQ496H8 165 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 AWAT1Q58HT5 328 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 ARMC4Q5T2S8 1044 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 INTS11Q5TA45 600 aaKnown RBP10.71□□□□□ -0.69
SKA1-205ENST00000494518 USP43Q70EL4 1123 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 SLC30A8Q8IWU4 369 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 MICU2Q8IYU8 434 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 TEX29Q8N6K0 151 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 NANPQ8TBE9 248 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 KLF14Q8TD94 323 aaPredicted RBP10.71□□□□□ -0.69
SKA1-205ENST00000494518 TMEM239Q8WW34 195 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 NMD3Q96D46 503 aaKnown RBP10.71□□□□□ -0.69
SKA1-205ENST00000494518 MARS2Q96GW9 593 aaKnown RBP10.71□□□□□ -0.69
SKA1-205ENST00000494518 ATP6V1G3Q96LB4 118 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 DUX5Q96PT3 197 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 JMJD8Q96S16 334 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 SEPHS2Q99611 448 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 WNT5BQ9H1J7 359 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 MSL2Q9HCI7 577 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 NPHS2Q9NP85 383 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 EIF3KQ9UBQ5 218 aaKnown RBP10.71□□□□□ -0.69
SKA1-205ENST00000494518 RIMS3Q9UJD0 308 aa10.71□□□□□ -0.69
SKA1-205ENST00000494518 A0A1W2PPL8 197 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 J3QLI3 93 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 FBP2O00757 339 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 UBOX5O94941 541 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 FUT4P22083 530 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 ZFP36P26651 326 aaKnown RBP10.7□□□□□ -0.7
SKA1-205ENST00000494518 ZNF133P52736 654 aaPredicted RBP10.7□□□□□ -0.7
SKA1-205ENST00000494518 PPP1CBP62140 327 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 UBA52P62987 128 aaKnown RBP10.7□□□□□ -0.7
SKA1-205ENST00000494518 SF3A3Q12874 501 aaKnown RBP eCLIP10.7□□□□□ -0.7
SKA1-205ENST00000494518 FAM209AQ5JX71 171 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 NANOGP8Q6NSW7 305 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 ZNF774Q6NX45 483 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 SLC25A47Q6Q0C1 308 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 HDDC2Q7Z4H3 204 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 SIGLECL1Q8N7X8 197 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 ZMYND19Q96E35 227 aaPredicted RBP10.7□□□□□ -0.7
SKA1-205ENST00000494518 OR2H1Q9GZK4 316 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 POFUT1Q9H488 388 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 MED31Q9Y3C7 131 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 PCDHGB1Q9Y5G3 927 aa10.7□□□□□ -0.7
SKA1-205ENST00000494518 A0A0G2JND7 137 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 CENPBD1B2RD01 187 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 H7C1C5 153 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 KCNAB3O43448 404 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 TIMM8AO60220 97 aaPredicted RBP10.69□□□□□ -0.7
SKA1-205ENST00000494518 OR5F1O95221 314 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 SBK2P0C263 348 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 IFI30P13284 250 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 RBM34P42696 430 aaKnown RBP10.69□□□□□ -0.7
SKA1-205ENST00000494518 SEC61A1P61619 476 aaKnown RBP10.69□□□□□ -0.7
SKA1-205ENST00000494518 LCN6P62502 163 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 TAF11Q15544 211 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 LRRC23Q53EV4 343 aaPredicted RBP10.69□□□□□ -0.7
SKA1-205ENST00000494518 ALG10Q5BKT4 473 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 OTPQ5XKR4 325 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 CCDC80Q76M96 950 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 ST7LQ8TDW4 575 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 RASSF5Q8WWW0 418 aa10.69□□□□□ -0.7
SKA1-205ENST00000494518 EGLN1Q9GZT9 426 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms