RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PSMC3P17980 439 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 RAB7AP51149 207 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 NUTF2P61970 127 aaKnown RBP3.54□□□□□ -1.84
VPS13A-212ENST00000493341 PSMC5P62195 406 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 HSD17B13Q7Z5P4 300 aaPredicted RBP3.54□□□□□ -1.84
VPS13A-212ENST00000493341 OR51S1Q8NGJ8 323 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 ARPC1AQ92747 370 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 PIK3IP1Q96FE7 263 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 RNF170Q96K19 258 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 DNAJC1Q96KC8 554 aaKnown RBP3.54□□□□□ -1.84
VPS13A-212ENST00000493341 SERPINB12Q96P63 405 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF184Q99676 751 aaPredicted RBP3.54□□□□□ -1.84
VPS13A-212ENST00000493341 FOXC2Q99958 501 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 EBF4Q9BQW3 602 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 OSBPL10Q9BXB5 764 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 PATZ1Q9HBE1 687 aaKnown RBP3.54□□□□□ -1.84
VPS13A-212ENST00000493341 MRM3Q9HC36 420 aaKnown RBP3.54□□□□□ -1.84
VPS13A-212ENST00000493341 CSNK1G1Q9HCP0 422 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 AIG1Q9NVV5 245 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 WWOXQ9NZC7 414 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 ADA2Q9NZK5 511 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 CD274Q9NZQ7 290 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 CTSFQ9UBX1 484 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 NOSIPQ9Y314 301 aaKnown RBP3.54□□□□□ -1.84
VPS13A-212ENST00000493341 MROH7Q68CQ1 1323 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 ERCC6L2Q5T890 1561 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 LRRK1Q38SD2 2015 aa3.54□□□□□ -1.84
VPS13A-212ENST00000493341 A0A1W2PPR1 153 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 A0A1W2PRF3 423 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 A0A1W2PRM7 423 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 SLC22A20A6NK97 555 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF726A6NNF4 738 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 SMKR1H3BMG3 65 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 LINC01565O15544 149 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 TDP2O95551 362 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 IGHV3-48P01763 117 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 DCNP07585 359 aaKnown RBP3.53□□□□□ -1.84
VPS13A-212ENST00000493341 SERPINB8P50452 374 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 CLINT1Q14677 625 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 TPRG1LQ5T0D9 272 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 FAAP20Q6NZ36 180 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 PRMT9Q6P2P2 845 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 TMEM150AQ86TG1 271 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF677Q86XU0 584 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 FAM9CQ8IZT9 166 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 C9orf106Q8NAJ2 232 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 OR10R2Q8NGX6 335 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 BAALCQ8WXS3 180 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 KIAA0586Q9BVV6 1533 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 C19orf24Q9BVV8 132 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 KIR3DX1Q9H7L2 352 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 UBE2ZQ9H832 354 aaPredicted RBP3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ANKHQ9HCJ1 492 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 SLC25A15Q9Y619 301 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 AK9Q5TCS8 1911 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 CTTNBP2Q8WZ74 1663 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 NUPL2O15504 423 aaKnown RBP3.53□□□□□ -1.84
VPS13A-212ENST00000493341 PI15O43692 258 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ICOSLGO75144 302 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 SMC2O95347 1197 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 YEATS4O95619 227 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ARG1P05089 322 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 KLK1P06870 262 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 CSKP41240 450 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 DLX1P56177 255 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ARFRP1Q13795 201 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 VAMP3Q15836 100 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 LCN12Q6JVE5 192 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF497Q6ZNH5 498 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF329Q86UD4 541 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 LRRC8AQ8IWT6 810 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ZADH2Q8N4Q0 377 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 WDSUB1Q8N9V3 476 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ITFG1Q8TB96 612 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ZNF689Q96CS4 500 aaPredicted RBP3.53□□□□□ -1.84
VPS13A-212ENST00000493341 NRBF2Q96F24 287 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 KIR2DL4Q99706 377 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 MAP1LC3CQ9BXW4 147 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 TRIM15Q9C019 465 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 OR51J1Q9H342 316 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 RPF2Q9H7B2 306 aaKnown RBP3.53□□□□□ -1.84
VPS13A-212ENST00000493341 CD300AQ9UGN4 299 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 ASF1AQ9Y294 204 aa3.53□□□□□ -1.84
VPS13A-212ENST00000493341 KIF13AQ9H1H9 1805 aa3.52□□□□□ -1.85
VPS13A-212ENST00000493341 ZNF780AO75290 641 aaPredicted RBP3.52□□□□□ -1.85
VPS13A-212ENST00000493341 IGKV3-20P01619 116 aa3.52□□□□□ -1.85
VPS13A-212ENST00000493341 FOLR2P14207 255 aa3.52□□□□□ -1.85
VPS13A-212ENST00000493341 CSNK2A2P19784 350 aaPredicted RBP3.52□□□□□ -1.85
VPS13A-212ENST00000493341 COX7A1P24310 79 aa3.52□□□□□ -1.85
VPS13A-212ENST00000493341 SERPINB5P36952 375 aa3.52□□□□□ -1.85
VPS13A-212ENST00000493341 SPAM1P38567 509 aa3.52□□□□□ -1.85
VPS13A-212ENST00000493341 EGFEM1PQ0D2K5 195 aa3.52□□□□□ -1.85
VPS13A-212ENST00000493341 ORC2Q13416 577 aaPredicted RBP3.52□□□□□ -1.85
VPS13A-212ENST00000493341 ART3Q13508 389 aa3.52□□□□□ -1.85
VPS13A-212ENST00000493341 USF2Q15853 346 aaPredicted RBP3.52□□□□□ -1.85
VPS13A-212ENST00000493341 C18orf21Q32NC0 220 aaPredicted RBP3.52□□□□□ -1.85
VPS13A-212ENST00000493341 PRR30Q53SZ7 412 aaPredicted RBP3.52□□□□□ -1.85
VPS13A-212ENST00000493341 CGB2Q6NT52 195 aa3.52□□□□□ -1.85
VPS13A-212ENST00000493341 OR2W3Q7Z3T1 314 aa3.52□□□□□ -1.85
VPS13A-212ENST00000493341 VKORC1L1Q8N0U8 176 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms